Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00079 ATGGGTAAAGACTCTATCCCGGCAACTGAACCCCTAGATAAGTCAAAAGTCTTGGACGTAAAACCATTGCGCTGTCTGGTTCCAGTATTTCCCTCAGCAAATAATGTTTCTACTTCAACGCCAAATTCTCTAGGCGGAGCTCCATTTGTTTGTGCCAGCCCATCTGGTCCTTTTCCACCAGGGATTGCGCCGTTCTACCCTTTCTTCTTTTCTCCAGAACTAAAACAACAGCACCAGGCTGATACAACAAACCAAAGCAACACGCCCTTAGGCTTCAACAGTCCTATATCAAATGCAGTTCCAATATCTTCATTTAGGACTCCGATTTCTCCTCCTGAAGAAACTCCAACTCGATATAGGGCTGCTGCGAATGGAGGCACAGGCTCATCGAGAAGAAGAAGAATTGGTGAGGAATATACTACTGCTCCACCTGATTCAGACTTAGACTCAATACTGAATAGGATGCTGACCTCCTGCAATATCGCATCATTTGACCCTGTTCGGCGATCCAATGGTGATAGGGAAACAGTACGTTTGGTCCTTACGTTGTGTGATATGCTGAGGTGGAAGATTGCACAGCTTGAAGAGTCAAAGGAAGCTATTCCAGGAGTCGCAAAACGTCCTGATTTGAAAGCAGCTGCAGTCCTCATGAGCAAAGGTATACGAACAAATACCAACAAAAGAATCGGGACTGTTCCGGGAGTTGAGATCGGGGATATCTTCTTTTTTAGAATGGAAATGTGTTTGGTTGGATTACATTCTCCATCTATGGCTGGAATTGATTACTTGACTTTGAAGAATAGCAATGATGACGACCCATTGGCTGTGAGCATTGTTTCTTCAGGTGGTTATGAAGATGACAATGAGGATGCAAATGTGCTCATTTACAGCGGTCAAGGAGGGGTTAACAGAAAAGATAAGGAAATGAAGGATCAGAAACTTGAAAGGGGAAATCTTGCTCTGGAGAAAAGCTTGCATCGGGGAAACGATGTTAGAGTTATTCGTGGGCTAAGTGATATATCCAATCCGACAAGAAAAATTTACGTGTATGATGGTCTTTATAAAATCCAGGAATCTTGGATAGAGAAAGGGAAGTCGGGTTGCAATGTTTTCAAGTATAAATTGGTCAGATTACCTGGCCAAGCAGATGGATTTATGACATGGAAAATGTCTCAACAATGGAAGGAAGGAACTGTTTCTAGGATTGGTGTTATTTTGTCAGATCTTACTTCAGGTGCTGAAAATATTCCTGTCTCTCTTGTAAATGATGTCGATGATGAGAAGGGCCCTGCATATTTCACGTATTATCCCGGTCTAAAGTATTCTAAATCATTGAACATCACAGAACCTTCAAATGGCTGTAATTGCACTGGTGGTTGTCTCCCAACCTATTCCAACTGTTCCTGTATACAGAAAAATGGAGGAAACCTTCCCTATTCTGCAAATGGGCTCCTTTTGAGCCAAAAATCATTGATTAATGAATGTGGTCCTTTGTGTTGCTGTCCTCCTAATTGCCGAAACCGCGTGACTCAAGGGGGTCTAAAATTTTGTTTGGAAGTATTTAGAACTAAAGATAAAGGCTGGGGATTAAGGTCTTGGGATGCAATTCGAGCTGGTGCCTTTATTTGTGAATATGCTGGGGAAGTCATTGGCACTGGGAATGAAAAAAAGTCTGTAAGGGATGATGACGATGAATACGTCTTTGATACTAATCGTACTTATAAAACAATCGAAGGTCTTTGTGAGTCGAACGATTCTTCCTCAATCCCAACGCCACTAATTATAAGCGCAAAAAATGCTGGGAATGTAGCTAGGTTCATGAATCACAGTTGCTCTCCCAATATACGCTGGAAGCCAGTCGTTCGGGAAAACAAAAGTGAGTGTGATTTACACGTGGTCTTCTATGCAGTCAGGCATGTACCCCCCATGACTGAGCTGACATATGATTATGGAATGATCACCTCTAAAAAGGCTGATGGAAGGAAGAAAAAGTGCTTATGTGGATCTCTCAAGTGCAGAGGATTTTTCTATTGA 2034 42.28 MGKDSIPATEPLDKSKVLDVKPLRCLVPVFPSANNVSTSTPNSLGGAPFVCASPSGPFPPGIAPFYPFFFSPELKQQHQADTTNQSNTPLGFNSPISNAVPISSFRTPISPPEETPTRYRAAANGGTGSSRRRRIGEEYTTAPPDSDLDSILNRMLTSCNIASFDPVRRSNGDRETVRLVLTLCDMLRWKIAQLEESKEAIPGVAKRPDLKAAAVLMSKGIRTNTNKRIGTVPGVEIGDIFFFRMEMCLVGLHSPSMAGIDYLTLKNSNDDDPLAVSIVSSGGYEDDNEDANVLIYSGQGGVNRKDKEMKDQKLERGNLALEKSLHRGNDVRVIRGLSDISNPTRKIYVYDGLYKIQESWIEKGKSGCNVFKYKLVRLPGQADGFMTWKMSQQWKEGTVSRIGVILSDLTSGAENIPVSLVNDVDDEKGPAYFTYYPGLKYSKSLNITEPSNGCNCTGGCLPTYSNCSCIQKNGGNLPYSANGLLLSQKSLINECGPLCCCPPNCRNRVTQGGLKFCLEVFRTKDKGWGLRSWDAIRAGAFICEYAGEVIGTGNEKKSVRDDDDEYVFDTNRTYKTIEGLCESNDSSSIPTPLIISAKNAGNVARFMNHSCSPNIRWKPVVRENKSECDLHVVFYAVRHVPPMTELTYDYGMITSKKADGRKKKCLCGSLKCRGFFY 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 598416 600611 + BLOR02955 Blo11g00079 66279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00079 677 Pfam SET domain 527 651 IPR001214 GO:0005515
Blo11g00079 677 Pfam Pre-SET motif 410 508 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Blo11g00079 677 ProSiteProfiles Pre-SET domain profile. 452 513 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Blo11g00079 677 MobiDBLite consensus disorder prediction 103 146 - -
Blo11g00079 677 Gene3D SET domain 399 677 IPR046341 -
Blo11g00079 677 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 88 677 IPR025794 GO:0016571
Blo11g00079 677 SMART G9a_1 225 381 IPR003105 -
Blo11g00079 677 SUPERFAMILY PUA domain-like 212 399 IPR015947 -
Blo11g00079 677 ProSiteProfiles Post-SET domain profile. 661 677 IPR003616 -
Blo11g00079 677 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 132 676 - -
Blo11g00079 677 ProSiteProfiles SET domain profile. 516 651 IPR001214 GO:0005515
Blo11g00079 677 Pfam SAD/SRA domain 229 381 IPR003105 -
Blo11g00079 677 SUPERFAMILY SET domain 415 674 IPR046341 -
Blo11g00079 677 SMART preset_2 406 500 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Blo11g00079 677 ProSiteProfiles YDG domain profile. 230 377 IPR003105 -
Blo11g00079 677 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 9 134 - -
Blo11g00079 677 SMART set_7 516 657 IPR001214 GO:0005515
Blo11g00079 677 Gene3D - 212 398 IPR036987 -
Blo11g00079 677 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 9 134 - -
Blo11g00079 677 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 132 676 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00079 K24405 SUVH1; [histone H3]-lysine9 N-dimethyltransferase [EC:2.1.1.368] - csv:101218938 905.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00138 Blo-Chr3:3884984 Blo11g00079 Blo-Chr11:598416 1.65E-116 dispersed
Blo05g00606 Blo-Chr5:15893452 Blo11g00079 Blo-Chr11:598416 3.35E-27 dispersed
Blo11g00079 Blo-Chr11:598416 Blo17g00555 Blo-Chr17:9965473 3.26E-94 dispersed
Blo02g00682 Blo-Chr2:19776486 Blo11g00079 Blo-Chr11:598416 6.75E-122 transposed
Blo11g00079 Blo-Chr11:598416 Blo12g00659 Blo-Chr12:24912375 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00079 . 13 676 Su(var)3-9 homologs AT5G04940 51.4 1.6e-186 649.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004080 1 3 2 2 2 1 2 1 1 1 1 1 2 1 2 2 1 3 2 1 1 1 1 1 1 1 1 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12875 PF02182 SAD_SRA 2.90E-51 CL0178 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00079 Blo_Chr11 FPKM 1.279793 1.298365 9.443024 11.27532 4.608578 4.59105 3.973337 2.022904 2.178126 1.932974