Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00085 ATGTTGTGGGTTGACAAGTATCGTCCCAAAACCCTAGACCAGATCATGGTCCACCAGGACGTCGCTCAGAACCTCAAGAAATTGGTTACGGAGCAGGACTGCCCACATTTACTCTTCTATGGACCTCCCGGCTCAGGAAAGAAAACCCTAATCATGGCCTTAATTCGACAGATGTTCGGACCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACATGGAAAGTGGATGCTGGAAGTCGAAGTATTGATATAGAGTTGACAACATTATCTAGTGCGAACCATGTGGAATTAAATCCCAGTGATGCAGGTTTTCAAGACAGGTACATTGTTCAAGAGATAATAAAGGAAATGGCAAAGAATAGACCAATTGATACAAAGGGAAGAAAAGGATATAAAGTCTTAGTTCTCAATGAAGTTGACAAACTATCAAGAGAAGCGCAGAATTCTCTACGCAGAACAATGGAGAAGTATAGTTCTTATTGCAGGTTAATACTTTGCTGTAATAGTTCGTCAAGAGTTATGGAAGCCATTAGGTCTCGATGTCTTAATGTGCGGATTAATGCCCCGACAGCAGAGCAGTTGGATTACAGTTCTATCTCCTTGTTTTCTGATAATAGTCAGTTAACTGCTGTTTGTATTGTTAAGGTGTTAGAGTTAGTGGGGAAGAAAGAAGGACTGCAGATTCCATCTGGATTTGCTGCTCGTATTGCAGAAAAATCAAATCGGAGTTTAAGGAGGGCTATATTGTCTTTAGAGACTTGTCGTGTGCAACAGTATCCTTTTAGTAGCAGTCAAGTCATACCACCAATGGATTGGGAGGAATATGTGGCAGAGATATCATCTGACATAATGAAGGAGCAGAGCCCTAAGAGATTGTTTGAAGTTCGAGGAAAGTTGTATGAGCTTCTCGTGAACTGTATTCCTGCAGAGATTATCTTAAAGAGATTACTGTATGAACTACTCAAAAAATTGGATGCAGAATTAAAGCATGAGATCTGCCATTGGGCTGCATATTATCCAAATTCTTCTGGGGATGTTCATAGACGACTAAGGAGTCTTGAATCTCTGTTTTGCTATGACAAGGCTATTCCAGAGCAAATAATTGAAAAGCCTGTTGGATTATCAATAGCAGAAAAAGTGATTGGAGATAATGTCAGGTGCACCGATTGTCAAGCTAAAGGTGCCGTCCTTTGCACCACTTGCTCTGGTTCTGGTTTATATGTTGACTCAATAATGGAGAGCCAGGGCATTATAGTGAAAGTTTGCTGCCTAGGTTGTGGTGGAAGTGGAAACATCATGTGTTCGGAGTGTGGTGGTCGAGGTCATCTCGGACGCAAATGA 1341 41.54 MLWVDKYRPKTLDQIMVHQDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALIRQMFGPSAEKVKVENKTWKVDAGSRSIDIELTTLSSANHVELNPSDAGFQDRYIVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSREAQNSLRRTMEKYSSYCRLILCCNSSSRVMEAIRSRCLNVRINAPTAEQLDYSSISLFSDNSQLTAVCIVKVLELVGKKEGLQIPSGFAARIAEKSNRSLRRAILSLETCRVQQYPFSSSQVIPPMDWEEYVAEISSDIMKEQSPKRLFEVRGKLYELLVNCIPAEIILKRLLYELLKKLDAELKHEICHWAAYYPNSSGDVHRRLRSLESLFCYDKAIPEQIIEKPVGLSIAEKVIGDNVRCTDCQAKGAVLCTTCSGSGLYVDSIMESQGIIVKVCCLGCGGSGNIMCSECGGRGHLGRK 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 635811 646483 + BLOR02961 Blo11g00085 66285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00085 446 SMART AAA_5 33 192 IPR003593 -
Blo11g00085 446 Gene3D - 1 189 IPR027417 -
Blo11g00085 446 Gene3D - 213 269 - -
Blo11g00085 446 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 382 443 IPR036410 -
Blo11g00085 446 Pfam DNA polymerase III, delta subunit 18 188 - -
Blo11g00085 446 SUPERFAMILY post-AAA+ oligomerization domain-like 270 340 IPR008921 GO:0003677|GO:0006260
Blo11g00085 446 CDD AAA 19 189 - -
Blo11g00085 446 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 344 - -
Blo11g00085 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 260 IPR027417 -
Blo11g00085 446 Gene3D - 271 359 - -
Blo11g00085 446 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00085 Blo-Chr11:635811 Blo12g01123 Blo-Chr12:28861147 1.47E-27 dispersed
Blo06g00136 Blo-Chr6:5482303 Blo11g00085 Blo-Chr11:635811 1.22E-59 transposed
Blo16g00637 Blo-Chr16:25425495 Blo11g00085 Blo-Chr11:635811 7.68E-45 transposed
Blo11g00085 Blo-Chr11:635811 Blo18g00180 Blo-Chr18:1717491 7.42E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00085 K10756 - jre:109000861 560.451