Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00117 ATGAGTAAGAAGCTACTAGTTCCGGGAGAAGAGAGTCACCTGAAATGGAGTAAGAAGACGAAGATGAACCAGAAAAGTGAGCAAGAGAGTGAGGCAGCCATTGGAGGAGTTAAAGAGGAGAAGAAGAAGATGGGTGCAGCTTTAGCCGATGGAAGGAACCGAAAAGCTCTGGGAGATATTGGAAATCTTGTAACAGTTCGAGGAATGGACCCAAAGCCTAATCGTCCCATCACAAGAAGTTTCTGCGCCCAATTGCTCGCTAATGCTCAAGCCGCTGCAGCTGCTGAAAACAACAAGAAACAATTGGCGGTAGAGGCTAATGATGTGGTGGCAGCGGGAAAAAAGGCAGGACTAGCTCCAAAGCCAACTCTGAAGAAAGAACAAAAGCCAGTCAAAGTGATCGAGATAAGCCCAGATTCAGATTCAGAAGTGAATAAATCGGAGAGCAAAAAGGAAGGAGAAGAAGTCTCGTCCAAGAAGAAACAGAAATCTACACAGAACTGTGACATAGATTCAGCTGATGCAGGAAACGAGTTAGCAGCAGTGGAATATATTGACGATATGTACAAGTTCTACAAGCTTGTTGAGCATGAAAGCCGGCCACGTGATTATATGGATTCACAGCCTGAGATCAATTCTCAAATGAGATCTATTCTGGTGGATTGGCTGGTTGATGTTCATAACAGATTTGAGCTTTCCCCTGAGACATTCTACCTCACAATCAACATCATCGATCGATATCTCGCGGCCAAGAAGGTGATGAGGAAAGAACTACAGTTGGTTGGTATAAGTGCAATGCTGATGGCCTCAAAATACGAAGAAATCTGGGCTCCTGAGGTGAATGACTTTGTCTGTCTTTCAGACAGAGCTTACTCCCACGAACAGATCTTGAAGATGGAGAAACTAATTCTAGGAAAACTTGAATGGACACTGACAGTTCCTACGCCTTATGTTTTTCTTGTTCGATTCATCAAGGCCGCTAAAGATGCCGATTCAGAAGTGGAGAACATGGTTTATTTTCTAGCTGAACTGGGAATGATGCATTATTCAGCTGTGATAACGTACAGCCCATCAATGATTGCTGCCTCAGCAGTCTACGCTGCTCGATGCACTTTGAACAAGAAATCTGCTTGGACTGAAACTCTGAAATTTCATTCCGGTTTTTCGGAATCACAGCTCATCGATTGTGCCAAATTGTTGGTGTGCTTCCATGCTATGGCGAGGGAGAGTCGACTGCAGGTCGTGAGGAAGAAGTACTCTGCTTCGGACAGAGGAGCTGTGGCTCTGCTTCCACCGGCTGAGAAATTGGTGTCTGCTGGGCTTGGACACACGACGACAAAATTGACACAATCTTGTTGA 1359 45.03 MSKKLLVPGEESHLKWSKKTKMNQKSEQESEAAIGGVKEEKKKMGAALADGRNRKALGDIGNLVTVRGMDPKPNRPITRSFCAQLLANAQAAAAAENNKKQLAVEANDVVAAGKKAGLAPKPTLKKEQKPVKVIEISPDSDSEVNKSESKKEGEEVSSKKKQKSTQNCDIDSADAGNELAAVEYIDDMYKFYKLVEHESRPRDYMDSQPEINSQMRSILVDWLVDVHNRFELSPETFYLTINIIDRYLAAKKVMRKELQLVGISAMLMASKYEEIWAPEVNDFVCLSDRAYSHEQILKMEKLILGKLEWTLTVPTPYVFLVRFIKAAKDADSEVENMVYFLAELGMMHYSAVITYSPSMIAASAVYAARCTLNKKSAWTETLKFHSGFSESQLIDCAKLLVCFHAMARESRLQVVRKKYSASDRGAVALLPPAEKLVSAGLGHTTTKLTQSC 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 879193 882706 - BLOR02993 Blo11g00117 66317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00117 452 MobiDBLite consensus disorder prediction 121 167 - -
Blo11g00117 452 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 40 441 - -
Blo11g00117 452 CDD CYCLIN 312 401 IPR013763 -
Blo11g00117 452 CDD CYCLIN 215 304 IPR013763 -
Blo11g00117 452 ProSitePatterns Cyclins signature. 216 247 IPR006671 -
Blo11g00117 452 Gene3D - 187 428 - -
Blo11g00117 452 Pfam Cyclin, N-terminal domain 187 311 IPR006671 -
Blo11g00117 452 MobiDBLite consensus disorder prediction 121 170 - -
Blo11g00117 452 SUPERFAMILY Cyclin-like 177 311 IPR036915 -
Blo11g00117 452 MobiDBLite consensus disorder prediction 1 50 - -
Blo11g00117 452 SMART Cyclin_C_2 314 433 IPR004367 -
Blo11g00117 452 Pfam Cyclin, C-terminal domain 314 432 IPR004367 -
Blo11g00117 452 SUPERFAMILY Cyclin-like 313 434 IPR036915 -
Blo11g00117 452 SMART cyclin_7 221 305 IPR013763 -
Blo11g00117 452 SMART cyclin_7 318 402 IPR013763 -
Blo11g00117 452 MobiDBLite consensus disorder prediction 1 49 - -
Blo11g00117 452 PANTHER CYCLINS 40 441 IPR039361 -
Blo11g00117 452 PIRSF Cyclin_A_B_D_E 11 446 IPR039361 -
Blo11g00117 452 Gene3D - 201 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00117 K21777 CCNB; G2/mitotic-specific cyclin-B, other - zju:107431525 501.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00117 Blo-Chr11:879193 Blo14g00303 Blo-Chr14:3100923 5.60E-129 dispersed
Blo11g00117 Blo-Chr11:879193 Blo12g00623 Blo-Chr12:24470175 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00685 BCT 74 342 Core Cell Cycle Gene Families AT3G48750 85.1 4.3e-136 481.1
Blo04g00353 . 377 588 Core Cell Cycle Gene Families AT3G48750 75.3 1.2e-93 340.1
Blo01g01649 . 11 307 Core Cell Cycle Gene Families AT3G48750 51.7 1.1e-91 333.6
Blo01g01028 . 1 275 Core Cell Cycle Gene Families AT3G48750 56.9 1.5e-85 313.2
Blo01g01028 . 1 275 Core Cell Cycle Gene Families AT3G54180 82.4 4.2e-134 474.6
Blo01g01649 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.1 3.0e-116 415.2
Blo13g00685 BCT 74 338 Core Cell Cycle Gene Families AT3G54180 55.0 7.5e-83 304.3
Blo04g00353 . 399 584 Core Cell Cycle Gene Families AT3G54180 58.1 7.0e-65 244.6
Blo01g01028 . 1 275 Core Cell Cycle Gene Families AT2G38620 67.3 1.4e-103 372.9
Blo01g01649 . 11 310 Core Cell Cycle Gene Families AT2G38620 56.3 6.4e-93 337.4
Blo04g00353 . 399 584 Core Cell Cycle Gene Families AT2G38620 58.1 3.6e-67 251.9
Blo01g01649 . 1 307 Core Cell Cycle Gene Families AT1G76540 83.1 6.3e-154 540.4
Blo01g01028 . 1 275 Core Cell Cycle Gene Families AT1G76540 65.1 2.4e-105 379.0
Blo13g00685 BCT 74 338 Core Cell Cycle Gene Families AT1G76540 52.0 9.9e-83 303.9
Blo01g01649 . 1 312 Core Cell Cycle Gene Families AT1G20930 82.2 2.6e-155 545.0
Blo01g01028 . 1 275 Core Cell Cycle Gene Families AT1G20930 65.8 1.2e-107 386.7
Blo13g00685 BCT 63 338 Core Cell Cycle Gene Families AT1G20930 52.8 5.6e-86 314.7
Blo14g00309 . 424 967 Core Cell Cycle Gene Families AT5G10270 71.0 6.1e-207 717.2
Blo03g00652 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 5.5e-99 358.6
Blo01g01669 . 150 478 Core Cell Cycle Gene Families AT5G10270 51.9 6.0e-98 355.1
Blo12g00827 . 150 466 Core Cell Cycle Gene Families AT5G10270 53.6 1.3e-97 354.0
Blo06g00980 CCT 147 463 Core Cell Cycle Gene Families AT5G10270 52.4 2.8e-95 346.3
Blo02g00578 BCT 100 416 Core Cell Cycle Gene Families AT5G10270 52.9 4.8e-95 345.5
Blo02g00071 . 143 459 Core Cell Cycle Gene Families AT5G10270 52.9 1.1e-94 344.4
Blo04g00781 BCT 116 432 Core Cell Cycle Gene Families AT5G10270 52.9 1.4e-94 344.0
Blo07g00189 BCT 99 417 Core Cell Cycle Gene Families AT5G10270 52.8 2.4e-94 343.2
Blo16g00179 BCT 116 434 Core Cell Cycle Gene Families AT5G10270 51.6 2.2e-92 336.7
Blo17g00605 . 115 339 Core Cell Cycle Gene Families AT5G10270 56.7 1.4e-70 264.2
Blo14g00309 . 488 966 Core Cell Cycle Gene Families AT5G64960 66.5 1.7e-168 589.3
Blo03g00652 . 177 439 Core Cell Cycle Gene Families AT5G64960 55.0 2.9e-83 306.2
Blo12g00827 . 204 466 Core Cell Cycle Gene Families AT5G64960 54.0 2.1e-81 300.1
Blo01g01669 . 204 468 Core Cell Cycle Gene Families AT5G64960 53.2 2.1e-81 300.1
Blo02g00071 . 197 459 Core Cell Cycle Gene Families AT5G64960 53.2 4.0e-80 295.8
Blo06g00980 CCT 201 463 Core Cell Cycle Gene Families AT5G64960 53.2 5.2e-80 295.4
Blo04g00781 BCT 170 432 Core Cell Cycle Gene Families AT5G64960 52.2 3.7e-78 289.3
Blo02g00578 BCT 154 416 Core Cell Cycle Gene Families AT5G64960 51.4 7.0e-77 285.0
Blo07g00189 BCT 153 417 Core Cell Cycle Gene Families AT5G64960 51.4 2.7e-76 283.1
Blo16g00179 BCT 170 436 Core Cell Cycle Gene Families AT5G64960 50.7 2.7e-76 283.1
Blo15g00568 . 177 439 Core Cell Cycle Gene Families AT5G64960 50.7 7.7e-76 281.6
Blo17g00605 . 166 339 Core Cell Cycle Gene Families AT5G64960 56.9 4.4e-55 212.6
Blo15g00063 . 4 402 Core Cell Cycle Gene Families AT1G73690 73.9 3.0e-169 591.7
Blo13g00180 . 4 389 Core Cell Cycle Gene Families AT1G73690 73.3 9.4e-163 570.1
Blo04g00353 . 399 581 Core Cell Cycle Gene Families AT1G73690 50.3 2.2e-50 196.8
Blo13g00180 . 12 341 Core Cell Cycle Gene Families AT1G66750 75.7 7.7e-153 537.0
Blo15g00063 . 12 335 Core Cell Cycle Gene Families AT1G66750 76.5 3.8e-152 534.6
Blo04g00353 . 401 581 Core Cell Cycle Gene Families AT1G66750 50.8 5.5e-50 195.3
Blo15g00063 . 8 403 Core Cell Cycle Gene Families AT1G18040 75.9 7.1e-171 597.0
Blo13g00180 . 8 389 Core Cell Cycle Gene Families AT1G18040 74.8 4.3e-160 561.2
Blo04g00353 . 401 581 Core Cell Cycle Gene Families AT1G18040 51.4 9.6e-51 198.0
Blo06g00177 . 35 564 Core Cell Cycle Gene Families AT5G63610 67.6 1.3e-190 662.9
Blo14g00502 . 1 475 Core Cell Cycle Gene Families AT4G28980 60.2 1.9e-165 579.3
Blo05g00857 . 4 486 Core Cell Cycle Gene Families AT1G44110 61.9 1.9e-154 542.7
Blo18g00177 CCT 4 495 Core Cell Cycle Gene Families AT1G44110 58.9 8.1e-150 527.3
Blo12g01089 . 204 480 Core Cell Cycle Gene Families AT1G44110 55.2 3.3e-87 319.3
Blo05g00111 . 207 497 Core Cell Cycle Gene Families AT1G44110 51.9 3.2e-82 302.8
Blo12g01089 . 204 468 Core Cell Cycle Gene Families AT1G77390 53.2 2.0e-76 283.5
Blo12g01089 . 15 483 Core Cell Cycle Gene Families AT5G25380 53.3 1.6e-115 413.3
Blo05g00857 . 205 477 Core Cell Cycle Gene Families AT5G25380 55.7 1.1e-82 304.3
Blo18g00177 CCT 213 492 Core Cell Cycle Gene Families AT5G25380 52.9 2.1e-78 290.0
Blo01g01510 CCT 90 362 Core Cell Cycle Gene Families AT5G25380 51.3 8.8e-77 284.6
Blo12g00976 . 92 368 Core Cell Cycle Gene Families AT5G25380 50.5 1.1e-76 284.3
Blo12g01089 . 2 420 Core Cell Cycle Gene Families AT5G11300 50.1 3.8e-98 355.5
Blo05g00111 . 207 435 Core Cell Cycle Gene Families AT5G11300 62.4 6.9e-76 281.6
Blo18g00177 CCT 215 433 Core Cell Cycle Gene Families AT5G11300 58.9 1.1e-68 257.7
Blo05g00857 . 207 425 Core Cell Cycle Gene Families AT5G11300 57.5 1.4e-68 257.3
Blo01g01510 CCT 90 304 Core Cell Cycle Gene Families AT5G11300 55.3 8.8e-63 238.0
Blo12g00976 . 92 306 Core Cell Cycle Gene Families AT5G11300 54.0 7.5e-62 235.0
Blo08g00138 . 1226 1392 Core Cell Cycle Gene Families AT5G11300 50.9 2.9e-37 153.3
Blo05g00111 . 200 497 Core Cell Cycle Gene Families AT1G15570 66.8 6.6e-112 401.4
Blo05g00857 . 205 484 Core Cell Cycle Gene Families AT1G15570 54.3 2.1e-81 300.1
Blo18g00177 CCT 213 492 Core Cell Cycle Gene Families AT1G15570 53.9 1.3e-80 297.4
Blo01g01510 CCT 61 359 Core Cell Cycle Gene Families AT1G15570 50.5 8.1e-78 288.1
Blo05g00111 . 19 497 Core Cell Cycle Gene Families AT1G80370 51.5 1.1e-114 410.6
Blo05g00857 . 205 472 Core Cell Cycle Gene Families AT1G80370 56.3 6.1e-81 298.5
Blo18g00177 CCT 213 495 Core Cell Cycle Gene Families AT1G80370 54.1 6.8e-80 295.0
Blo01g01510 CCT 90 367 Core Cell Cycle Gene Families AT1G80370 52.9 4.5e-76 282.3
Blo12g00976 . 92 369 Core Cell Cycle Gene Families AT1G80370 52.9 6.6e-75 278.5
Blo01g01510 CCT 3 372 Core Cell Cycle Gene Families AT5G43080 56.1 2.3e-112 402.5
Blo12g00976 . 3 371 Core Cell Cycle Gene Families AT5G43080 56.5 6.2e-110 394.4
Blo18g00177 CCT 216 493 Core Cell Cycle Gene Families AT5G43080 52.2 8.8e-80 294.3
Blo05g00857 . 208 486 Core Cell Cycle Gene Families AT5G43080 52.0 1.5e-79 293.5
Blo12g01089 . 206 475 Core Cell Cycle Gene Families AT5G43080 51.9 1.2e-76 283.9
Blo01g01510 CCT 3 372 Core Cell Cycle Gene Families AT1G47210 55.3 5.8e-114 407.9
Blo12g00976 . 3 371 Core Cell Cycle Gene Families AT1G47210 54.3 1.5e-109 393.3
Blo18g00177 CCT 216 493 Core Cell Cycle Gene Families AT1G47210 50.4 1.0e-78 290.8
Blo12g01089 . 206 475 Core Cell Cycle Gene Families AT1G47210 51.8 4.8e-76 282.0
Blo12g00976 . 81 371 Core Cell Cycle Gene Families AT1G47220 57.7 9.0e-95 344.0
Blo01g01510 CCT 90 369 Core Cell Cycle Gene Families AT1G47220 57.9 1.2e-91 333.6
Blo01g01510 CCT 3 374 Core Cell Cycle Gene Families AT1G47230 56.3 9.2e-112 400.6
Blo12g00976 . 2 371 Core Cell Cycle Gene Families AT1G47230 53.4 8.9e-107 384.0
Blo05g00857 . 190 486 Core Cell Cycle Gene Families AT1G47230 50.7 1.0e-78 290.8
Blo18g00177 CCT 212 493 Core Cell Cycle Gene Families AT1G47230 52.3 6.6e-78 288.1
Blo12g01089 . 207 474 Core Cell Cycle Gene Families AT1G47230 50.2 5.1e-70 261.9
Blo12g00623 . 160 566 Core Cell Cycle Gene Families AT4G37490 55.1 6.0e-107 384.8
Blo11g00117 . 45 438 Core Cell Cycle Gene Families AT4G37490 53.8 5.8e-102 368.2
Blo14g00303 . 625 891 Core Cell Cycle Gene Families AT4G37490 60.7 1.5e-86 317.0
Blo12g00623 . 152 454 Core Cell Cycle Gene Families AT5G06150 54.4 1.3e-72 270.4
Blo14g00303 . 529 823 Core Cell Cycle Gene Families AT5G06150 50.3 1.1e-63 240.7
Blo11g00117 . 49 394 Core Cell Cycle Gene Families AT3G11520 55.8 1.2e-98 357.1
Blo12g00623 . 164 521 Core Cell Cycle Gene Families AT3G11520 55.9 2.3e-97 352.8
Blo14g00303 . 528 884 Core Cell Cycle Gene Families AT3G11520 53.1 4.0e-86 315.5
Blo08g00138 . 1045 1412 Core Cell Cycle Gene Families AT3G11520 50.7 7.1e-83 304.7
Blo08g00138 . 1094 1448 Core Cell Cycle Gene Families AT2G26760 55.2 4.5e-101 365.2
Blo14g00303 . 588 911 Core Cell Cycle Gene Families AT2G26760 54.4 4.5e-93 338.6
Blo18g00748 . 203 621 Core Cell Cycle Gene Families AT2G17620 53.2 1.3e-112 403.7
Blo01g01635 . 35 429 Core Cell Cycle Gene Families AT2G17620 52.5 2.3e-106 382.9
Blo08g00138 . 1183 1439 Core Cell Cycle Gene Families AT2G17620 51.6 1.2e-62 237.7
Blo14g00303 . 657 919 Core Cell Cycle Gene Families AT2G17620 50.9 2.7e-62 236.5
Blo18g00748 . 203 578 Core Cell Cycle Gene Families AT4G35620 52.1 1.1e-91 334.0
Blo01g01635 . 35 383 Core Cell Cycle Gene Families AT4G35620 52.8 2.5e-88 322.8
Blo08g00138 . 1183 1412 Core Cell Cycle Gene Families AT4G35620 53.7 8.7e-57 218.0
Blo14g00303 . 657 884 Core Cell Cycle Gene Families AT4G35620 54.1 1.1e-56 217.6
Blo18g00748 . 171 621 Core Cell Cycle Gene Families AT1G20610 61.5 3.4e-142 501.9
Blo01g01635 . 1 427 Core Cell Cycle Gene Families AT1G20610 62.9 4.6e-139 491.5
Blo14g00303 . 657 910 Core Cell Cycle Gene Families AT1G20610 50.4 2.3e-61 233.4
Blo18g00748 . 171 518 Core Cell Cycle Gene Families AT1G76310 63.2 1.5e-108 389.8
Blo01g01635 . 1 324 Core Cell Cycle Gene Families AT1G76310 63.1 1.0e-101 367.1
Blo08g00138 . 1183 1350 Core Cell Cycle Gene Families AT1G76310 52.9 2.7e-41 166.4
Blo04g00460 . 194 476 Core Cell Cycle Gene Families AT1G16330 66.1 5.9e-106 382.1
Blo06g00865 . 1 337 Core Cell Cycle Gene Families AT1G70210 55.2 1.4e-93 340.1
Blo11g00878 . 1 372 Core Cell Cycle Gene Families AT1G70210 50.5 1.8e-90 329.7
Blo16g01148 . 21 319 Core Cell Cycle Gene Families AT1G70210 51.0 6.8e-69 258.1
Blo04g01131 . 7 282 Core Cell Cycle Gene Families AT2G22490 51.1 4.8e-73 271.9
Blo17g00869 BCT,CCT,ECH 57 329 Core Cell Cycle Gene Families AT4G34160 51.6 1.4e-70 263.8
Blo01g01517 BCT,CCT,ECH 53 286 Core Cell Cycle Gene Families AT4G34160 51.7 7.7e-66 248.1
Blo04g01131 . 6 211 Core Cell Cycle Gene Families AT5G65420 63.5 3.6e-73 271.9
Blo06g00063 . 112 314 Core Cell Cycle Gene Families AT5G65420 56.6 7.6e-63 237.7
Blo17g00102 . 61 265 Core Cell Cycle Gene Families AT5G65420 56.5 1.2e-60 230.3
Blo18g00114 . 53 254 Core Cell Cycle Gene Families AT5G65420 56.9 1.4e-56 216.9
Blo04g01131 . 1 180 Core Cell Cycle Gene Families AT5G10440 62.1 4.8e-63 238.0
Blo06g00063 . 104 283 Core Cell Cycle Gene Families AT5G10440 53.6 2.9e-52 202.2
Blo11g00015 . 56 239 Core Cell Cycle Gene Families AT5G10440 52.4 2.5e-48 189.1
Blo18g00114 . 50 228 Core Cell Cycle Gene Families AT5G10440 51.7 9.0e-46 180.6
Blo18g00615 CCT,ECH 885 1155 Core Cell Cycle Gene Families AT5G27620 57.8 3.8e-84 308.5
Blo03g01300 BCT 1 82 Core Cell Cycle Gene Families AT2G27960 92.7 5.3e-42 166.8
Blo03g01072 BCT 1 79 Core Cell Cycle Gene Families AT2G27960 91.1 1.6e-38 155.2
Blo03g01300 BCT 1 85 Core Cell Cycle Gene Families AT2G27970 88.2 8.1e-40 159.5
Blo03g01072 BCT 1 77 Core Cell Cycle Gene Families AT2G27970 89.6 9.9e-38 152.5
Blo13g00651 . 396 1396 Core Cell Cycle Gene Families AT3G12280 71.5 0.0e+00 1364.0
Blo05g00316 . 2 493 Core Cell Cycle Gene Families AT1G02970 59.2 1.7e-161 566.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001137 2 4 2 5 2 1 1 2 1 3 2 1 5 2 2 3 1 3 3 2 2 2 1 2 2 1 2 11 4 3 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00117 Blo_Chr11 FPKM 4.346088 4.42567 6.833289 7.339665 6.642027 6.811494 6.740698 11.123568 10.214096 11.063091