Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00133 ATGGCTGACCCTTACTCGAATTTCCTTACAGGTCTCTTCAAGCTCAACACAGTTCACCATAACCAACCTTCTCCCTTTCCAAACCCTCCGGCGCCCCCTCTTTTCTCCCAACCCTTTTTCCACCACCAAACTCCGCCGCCTTCCCCTCCTCTCAGGCAGGCCCTCCCCCTCCTCAGCCTCACCCCACTCAACCAACAACAACAGGAAGATCAATTTCACCACTCTTCCTCCACCGCCATGGAAGTGGATCAGAAAAGCTTCAAACAAAAAGAGGAGGAAGGAGAAGAAGAAGAAGAAGAAGAAAACGATGACGTGGCTTCTGTAACTGTTGCCCTTCATATAGGTTTACCTAGCCCTAGTTCAGCTGAGCTTGCTTCTGTTCTCTCTGCTTCTTCTTCTGAAACCACTGATCTTAAAGATCATGGAGACGGAGATGATTTAGGGTACCCCATAAACAGACTAAACAAGGGTCAGTATTGGATCCCTACTCCATCTCAGATTCTCATCGGTCCTACCCAGTTTTCTTGTCCTGTTTGCTATAAGACCTTCAACAGATATAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAATATAGAAGAGGGCCAGAATCACTGAGAGGCGCTCAACCAACAGGAATGCTAAGGCTTCCTTGCTACTGCTGTGCAACAGGATGCAGAAACAACATAGACCATCCGAGGGCTAAACCACTGAAAGATTTTAGAACCCTCCAAACACATTACAAAAGAAAGCACGGAATCAAGCCTTTTATGTGTAGAAAATGTGAGAAAGCCTTTGCAGTGAAAGGAGACTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTATCTGCGGGTCTGATTTTAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGCAAAGAGCATGCAGCATATGGAATTGATGGATTTGAAGAAGATGATGAACCGGCGTCTGAGGTTGAACAAGATAATGAATCTTTGCAGTAG 1008 45.24 MADPYSNFLTGLFKLNTVHHNQPSPFPNPPAPPLFSQPFFHHQTPPPSPPLRQALPLLSLTPLNQQQQEDQFHHSSSTAMEVDQKSFKQKEEEGEEEEEEENDDVASVTVALHIGLPSPSSAELASVLSASSSETTDLKDHGDGDDLGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGAQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCEKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHAAYGIDGFEEDDEPASEVEQDNESLQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1026571 1028714 - BLOR03009 Blo11g00133 66333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00133 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Blo11g00133 335 SUPERFAMILY beta-beta-alpha zinc fingers 240 278 IPR036236 -
Blo11g00133 335 MobiDBLite consensus disorder prediction 19 54 - -
Blo11g00133 335 MobiDBLite consensus disorder prediction 23 53 - -
Blo11g00133 335 PANTHER ZINC FINGER PROTEIN WIP2 24 334 IPR043584 GO:0003700|GO:0010468
Blo11g00133 335 MobiDBLite consensus disorder prediction 66 83 - -
Blo11g00133 335 Gene3D Classic Zinc Finger 173 196 - -
Blo11g00133 335 MobiDBLite consensus disorder prediction 66 106 - -
Blo11g00133 335 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 24 334 - -
Blo11g00133 335 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Blo11g00133 335 SUPERFAMILY beta-beta-alpha zinc fingers 170 196 IPR036236 -
Blo11g00133 335 Gene3D Classic Zinc Finger 236 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00203 Blo-Chr5:2073554 Blo11g00133 Blo-Chr11:1026571 2.24E-126 dispersed
Blo06g00606 Blo-Chr6:28838206 Blo11g00133 Blo-Chr11:1026571 8.35E-121 dispersed
Blo11g00133 Blo-Chr11:1026571 Blo16g01053 Blo-Chr16:39048920 1.65E-98 dispersed
Blo08g00042 Blo-Chr8:355084 Blo11g00133 Blo-Chr11:1026571 4.62E-103 transposed
Blo11g00133 Blo-Chr11:1026571 Blo12g00588 Blo-Chr12:24185750 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12884 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00133 - - jre:108986074 484.567