Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00181 ATGGCAACTCGGGTCGAAGAAGAAGAGAAGGCAGCAGCGTCAGCAAACTCAGTCTCAGCGAGACGTTACAGAAAGTGGGTGCCCTTGTTTTGTAGGGTTTTGGCTGTTCTTGCGAGTGCTAGTGCAGCCATTGTGATGGGTTTGAACAAAGAGAGCAAAGACTTCGTCGTTGCAACCACTGGAATAGTGCCTGTTAAGGTCACTCTGACTGCCAAGTTTCAACATACTCCGGCTTTTGTATTCTTTGTGGTGGCCAATGGAATGGCTTCTCTCCACAGCTTGGTGATGATAATAGTTGATGTTTTTGGGAAGAAGCTTGGCTATCAGAGATTGAGATTTGCCATAGTTGCTATTTTGGATATGCGCATTGCGGAAACAGAGAGTAGAGAGAGAAAGTGTTCATCTGTGTTTGTCAAGTTTGATTGGCATCGTAGCCTTTCAGAAGGTTTTCACATTATCGTAGCAGATCTAATGGAACAGGGTAAATCTGTTGCATCATCTCGTTCTAAAGAGAAAAAGCTTTTTCTTTTGGAGAATACCTCGTTGAGTCTTACGTTGGCAGCATATCTTGCTAATACACATTCCACCGTGATTTTCGTGTTTCAGATATTAAGTAGATGGGATCCAAATGAAGCATGCAGGCCTATCATTGGGGAAGCACCTGTATTTTATCCCACGACTGAGGAGTTTGAAGATACACTAGGTTATATAGCAAAGATTCGCAAGGAAGCAGAATTATATGGTATTTGTCGGATTGTTCCTCCACCTACATGGAATCCACCATGCATTCTTAAGGAGAAAGAAATATGGGAGAATGCAAAATTTTCAACGCGGATTCAGCTAGTTGACTTGCTACAAAATAGGGAACCCATGAGAAAGAATAGCAGAAGCAGAAAAAGAAAACGAAGAAAGAATTCAAGAATGGGAAAAATGAGGAGGTCAACAAATTCTGGTTCTGACACAAATGTTCCGTCTGAGACAGATAACACATTTGGATTCAATTCTGGACCAGATTTTACGCTCGCTGATTTTCAGAGACATGCTGATTATTTTAAAAAGTGCTATTTTGGAATGAAAGAGGCAGAGAATGACTTAGATGCTAGTGAAATTGAACCAAAGAAGAGATGGCAGCCATCTGTGGAAGAAATTGAAGGCGAATACTGGCGGATAGTTGAACAACCAACGGATGAGGTTGAGGTGTACTATGGAGCTGACTTGGAAACAGGAACATTTGGAAGTGGGTTCCCTAAAGCGTCACATTCGTCAACTCAAAGCAATTCAGATAAGTATATGATCTCGGGCTGGAATCTTAATAACTTTCCGCGGTTGCCAGGTTCTGTGTTGGGTTTTGAAGAAAGCAATATCTCAGGAGTTCTAGTGCCATGGCTTTACGTTGGGATGTGCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCCTTGAACTATTTACACTTGGGTGATCCAAAAGTTTGGTACGGAGTTCCTGGAAGCCATGCTTCTGCCTTGGAAGCTGCAATGAAAAAGCATTTGCCAGATTTGTTTGAGGAACAGCCAGATTTACTTCATGAATTGGTTACTCAGTTATCACCTTCGGTTCTCAAATCAGAAGGAATACCAGTATACCGTGCTGTTCAAAATGCAAGGGAGTTTGTTCTGACATTTCCGAGGGCATACCATGCTGGATTTAATTGCGGTTTCAATTGCGCCGAGGCAGTGAATGTGGCACCTGTTGATTGGTTGGTTCATGGGCAAAATGCAGTGGAGCTCTATAGTGAGCAGTCTCACAAGACATCAGTGTCTCATGATAAATTATTATTTGGTTCAGCTCAGGCAGCTGCTCAAGCACTTTCAGAAATTCATGTTCTTGGGAAGGAAACTCCATGGAAATATGTGTGTGGTATAGATGGTGCCCTTACAAAGGCGGTTAAGGGAAGGGTACAGATAGAGAAGGAGAGAAGAGATTTTCTTCCATCGCATTTGAAGGTGAAAAAGATGAAAAGAGAAGTCGATTGCGAGGACAGGGAATGTTTTTCTTGCTTTTACGACTTACACTTGTCTGCAGCTGGCTGCAAATGCTCCCCCAATCGTTTTTCATGCCTTAAACATGCAAGTAACTTTTGTTCTTGTGAAATGGATCAAAGGTTTGTCCTCATTCGCTATACTATAGATGAACTCGATACTCTTGTTGAGGCCTTGGAAGGAGGATTAGAAGCCGTCAAACTATGGGCCACAGAGAACTCTCAAAAAACTTCTTCTTCGGATGACTGCGATACAAATATGGAATCGGGGAGTGAATTATGCAAATCTAAACAAGGCTTAATCGATTTAAATCTTGATATTATGTGGGAGGAAGAGAAAAATGGGTGGCTTGGTTCATCTGATCATAAACTAATCAAAGATGAAGTCGGGAATTTTCATAGACGGGGCAGAGAAAGGCAAGCCTCACCCGCTTTTTCAGGCACAGATCGTTCTTCCGGTTTTGGAGACGGTGGGAGTAGAGATTTTTTTAGTAGTAGGCTGTTTGATTTTGATATTGCATTTCCTCAACTTTCGCATACTACTTCAATGCCGAGTTGTTCCATAAAAATGGAAGCTCTACATCCCTCTGAGCCCGAGCTAATAGACATCGGATCTCCCGTGTTTGAAAACGGTTGGTGCAGCGAGCAGGCTATATTTCCGAAAGGATATAGAAGCCGTGTTAAATTCAACAGCCTGCTTGATCCATGGTTTAGTTGTAGCTATGTATCAGAAGTTCTTGATGGAGGGTCTCTTGGGCCTCTATTCAAGGTCACGTCTGAGGAATGTCCGTGGGAGCCTTTTGCTAACTCCTCTGCCGATAAATGCTGGGAAATGGTAGCGCAGAGTATAAACCGGGACATTAACACAAGCAAAAGGCTCCATGATTTGCAGCCATTGCAGAAAATTAGTGGTCTTCAAATGTTTGGTTTCCTCTCCCCGCATATTAGACAGCGAATCGAGGCGCTCGATCCATATCATAGATGCTTGGAGTATTGGAAATATCAGCGCAGCAATGGCAATTCCAAGATCGATTATCCGTCAAGACACGCACCCGAAGCGTCTAGAACAATGACTCTCGATATCTTCAAAGAAAGTGTTCGTCAAGGGGACGAAGAAAAGGTGCTGAGAGGGCTCCTGAATAAGGCAAGTAAAAGAGAGCTGAGCTTAATGCATAGAATCTTCTGCCATGAACGTATAAATGATGAATTGAGATTGGCTCTGGCATCAACTATTGACGAGAAGCTCAAATTTTTTGGATAG 3291 42.6 MATRVEEEEKAAASANSVSARRYRKWVPLFCRVLAVLASASAAIVMGLNKESKDFVVATTGIVPVKVTLTAKFQHTPAFVFFVVANGMASLHSLVMIIVDVFGKKLGYQRLRFAIVAILDMRIAETESRERKCSSVFVKFDWHRSLSEGFHIIVADLMEQGKSVASSRSKEKKLFLLENTSLSLTLAAYLANTHSTVIFVFQILSRWDPNEACRPIIGEAPVFYPTTEEFEDTLGYIAKIRKEAELYGICRIVPPPTWNPPCILKEKEIWENAKFSTRIQLVDLLQNREPMRKNSRSRKRKRRKNSRMGKMRRSTNSGSDTNVPSETDNTFGFNSGPDFTLADFQRHADYFKKCYFGMKEAENDLDASEIEPKKRWQPSVEEIEGEYWRIVEQPTDEVEVYYGADLETGTFGSGFPKASHSSTQSNSDKYMISGWNLNNFPRLPGSVLGFEESNISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHLGDPKVWYGVPGSHASALEAAMKKHLPDLFEEQPDLLHELVTQLSPSVLKSEGIPVYRAVQNAREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSEQSHKTSVSHDKLLFGSAQAAAQALSEIHVLGKETPWKYVCGIDGALTKAVKGRVQIEKERRDFLPSHLKVKKMKREVDCEDRECFSCFYDLHLSAAGCKCSPNRFSCLKHASNFCSCEMDQRFVLIRYTIDELDTLVEALEGGLEAVKLWATENSQKTSSSDDCDTNMESGSELCKSKQGLIDLNLDIMWEEEKNGWLGSSDHKLIKDEVGNFHRRGRERQASPAFSGTDRSSGFGDGGSRDFFSSRLFDFDIAFPQLSHTTSMPSCSIKMEALHPSEPELIDIGSPVFENGWCSEQAIFPKGYRSRVKFNSLLDPWFSCSYVSEVLDGGSLGPLFKVTSEECPWEPFANSSADKCWEMVAQSINRDINTSKRLHDLQPLQKISGLQMFGFLSPHIRQRIEALDPYHRCLEYWKYQRSNGNSKIDYPSRHAPEASRTMTLDIFKESVRQGDEEKVLRGLLNKASKRELSLMHRIFCHERINDELRLALASTIDEKLKFFG 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1419284 1427709 - BLOR03057 Blo11g00181 66381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00181 1096 Pfam F/Y rich C-terminus 929 1010 IPR003889 GO:0005634
Blo11g00181 1096 ProSiteProfiles FYR domain FYRC motif profile. 927 1015 IPR003889 GO:0005634
Blo11g00181 1096 MobiDBLite consensus disorder prediction 290 331 - -
Blo11g00181 1096 PANTHER LYSINE-SPECIFIC DEMETHYLASE 202 1090 - -
Blo11g00181 1096 SMART fyrc_3 931 1017 IPR003889 GO:0005634
Blo11g00181 1096 SMART fyrn_3 881 925 IPR003888 GO:0005634
Blo11g00181 1096 Pfam C5HC2 zinc finger 680 732 IPR004198 -
Blo11g00181 1096 SUPERFAMILY Clavaminate synthase-like 430 615 - -
Blo11g00181 1096 Pfam JmjC domain, hydroxylase 462 578 IPR003347 -
Blo11g00181 1096 Pfam jmjN domain 221 254 IPR003349 -
Blo11g00181 1096 ProSiteProfiles JmjN domain profile. 220 261 IPR003349 -
Blo11g00181 1096 MobiDBLite consensus disorder prediction 293 310 - -
Blo11g00181 1096 SMART JmjN_1 219 260 IPR003349 -
Blo11g00181 1096 MobiDBLite consensus disorder prediction 311 331 - -
Blo11g00181 1096 Pfam Casparian strip membrane protein domain 25 122 IPR006702 -
Blo11g00181 1096 Pfam F/Y-rich N-terminus 877 922 IPR003888 GO:0005634
Blo11g00181 1096 ProSiteProfiles FYR domain FYRN motif profile. 867 925 IPR003888 GO:0005634
Blo11g00181 1096 Gene3D - 875 1006 - -
Blo11g00181 1096 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 30 123 IPR006459 -
Blo11g00181 1096 Gene3D Cupin 205 579 - -
Blo11g00181 1096 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 202 1090 - -
Blo11g00181 1096 ProSiteProfiles JmjC domain profile. 429 595 IPR003347 -
Blo11g00181 1096 SMART cupin_9 429 595 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00181 - - - zju:107433853 1018.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00362 Blo-Chr3:8136465 Blo11g00181 Blo-Chr11:1419284 9.35E-107 dispersed
Blo11g00181 Blo-Chr11:1419284 Blo11g00440 Blo-Chr11:3878954 1.09E-09 dispersed
Blo11g00181 Blo-Chr11:1419284 Blo10g00272 Blo-Chr10:3891155 1.16E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00181 . 202 1022 JUMONJI Transcription Factor Family AT1G30810 52.6 9.1e-237 817.0
Blo10g00272 BCT,CCT 154 687 JUMONJI Transcription Factor Family AT1G30810 53.7 5.6e-170 595.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12888 PF02373 JmjC 2.70E-45 CL0029 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00181 Blo_Chr11 FPKM 2.244308 2.165979 2.000608 2.252629 1.189206 1.168995 1.649965 3.794357 2.896104 3.596995