Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00225 ATGAGGCTTTCTTCAGCTGGTTTCAGTCCTCAATCCCATGAAGGAGAGATGAAGGTGTTAAATTCTGAGCTATGGCATGCTTGTGCCGGTCCTCTGGTTTCTCTACCTGCTATTGGAAATAGAGTCGTGTATTTTCCTCAAGGTCATAGTGAACAGGCAGATGTTGAGACAGATGAAGTGTATGCTCAAATGACATTGCAGCCACTAAGTCAACAAGAGCAAAAGGAAACTTACCTTCCAGCTGAGTTTGGTGCTCCTAGTAAACAGCCTACAAATTATTTCTGCAAAACCTTAACAGCGAGCGATACGAGCACTCATGGAGGTTTCTCTGTTCCTCGCCGGGCTGCTGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAGCAGCCCCCCGTTCAAGAATTAATGGCGAGGGATCTTCACGATAATGAATGGAAATTTAGACATATATTTCGTGGTAGGAATGAAAAGAATCAATTACTCCTTGGCATTCGACGTGCTAATCGACCGCAAACCATGATGCCTTCCTCAGTTTTATCGTGTGATAGCATGCACTTGGGCCTTCTTGCCGCCGCCGCTCATGCAGCTGCAACAAATAGTCGATTCACCATATTTTATAACCCAAGGGCGAGCCCAACTGAATTCGTAATACCGTTTGCCAAGTACGTAAAGGCTGTCTACAACACTCGTGTCTCTGTTGGAATGCGGTTTAGGGCGATGTTCGAAACGGAAGAATCAAGTGTTCGTCGGTATGTTGGATGGGATGAGTCAACTGCAGGAGAGAGGCAGCCGAGAGTGTCGTTGTGGGAGATTGAACCCTTGACGACATTCCCAATGTATCCTCCTCCGTTTTCCCTTCGGCTAAAGCGGCCATGGCCTATTGGTTTACCCTCTGTCAATGGAATCAATGAAAATGATCTGGGAATGAATTCTACCCACTTGTGGCTAGGTGGAGATAATGAATCTCTTAACTTCAATGGAGGAGTTTCGCCATGGATGCAACCGAGGCTTGATTCCTCCATGCTCAGTCTGCAGTCTGATGTGTATCAATCTATGGCTGCTTCTGCAGCACTGGAGAAGATGAAGATGATAAACTCATCCAAATTACCTTTCCAATTTCCATTTTCTCCACAAGCTCAGCAGGCCTTCCTTCCAACCATGGCGGAAAATGGACCTCATCAGGTCTTCCTTCCAACCATGGTGGAAAATGGACCTGATTCTCAACCTCAGATTCAAAAACTGCCTCAAATTTTCCAGCAAAAATTGCAGATTCCTAATGAAAGATTGGGAACTGATTCTTATCATGGTTTATTGAGTCCATTTCCTCAAAATGAAGATGATTCATCTCATCGACTCAACCTTCCAAGAAATTACGGTCTGATTCCTTCTTCAACTTGGCCTTCTAAGCGGGCTGCTCTTGATCCTCTGTTTCCATTTGTACTTCCTCAAGTAGAAGAACATTTGGTGTCATTGCCACCATTTCCGGGTCGAGAGTGCTCGATTGATCAACAAAACCATCTTTTATATGGTTTGAATATCAAACCAAAAAGTTCCCCATTTTTTTCTAATTTCATGGCTTCCAATGGTAGCGATTACCCCAATAATGGTGTAATGACACCTTCCACTTCCATTGATGATCCGGGATTCTTGTCTTCAAAAAACATGTCCCAAGAAGTCCACCCATCATCCAGAAACTTCGTCAAGGTTTATAAATCACAGTCCTTTGGTAGATCATTGGACATTACCAAGTTTAATAGCTACCCCGAGCTACGCAGTGAGCTTGATCAAATGTTTAGCTTGGATGGTGTGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTCGTCGATCGGGAGAATGAAATTCTTCTCCTCGGTGATGGCCCGTGGGCGGAGTTCGTAAATAACGTCTGGTGTATAAAAATATTGTCGCCTCAAGAAGTGCTCGAAATGGGAAAACCCGATGCAAAGCTTTTGAACACACTGTCGATTCAGAGGCGCTCGGGCGGAAGTTGCGATGAGAATGTGATCCGACAAAATTCGAGAAACTCGAGCAGCGGATTAACTTCCGTTGGGTCCCTAGACAACTGA 2091 44.81 MRLSSAGFSPQSHEGEMKVLNSELWHACAGPLVSLPAIGNRVVYFPQGHSEQADVETDEVYAQMTLQPLSQQEQKETYLPAEFGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPVQELMARDLHDNEWKFRHIFRGRNEKNQLLLGIRRANRPQTMMPSSVLSCDSMHLGLLAAAAHAAATNSRFTIFYNPRASPTEFVIPFAKYVKAVYNTRVSVGMRFRAMFETEESSVRRYVGWDESTAGERQPRVSLWEIEPLTTFPMYPPPFSLRLKRPWPIGLPSVNGINENDLGMNSTHLWLGGDNESLNFNGGVSPWMQPRLDSSMLSLQSDVYQSMAASAALEKMKMINSSKLPFQFPFSPQAQQAFLPTMAENGPHQVFLPTMVENGPDSQPQIQKLPQIFQQKLQIPNERLGTDSYHGLLSPFPQNEDDSSHRLNLPRNYGLIPSSTWPSKRAALDPLFPFVLPQVEEHLVSLPPFPGRECSIDQQNHLLYGLNIKPKSSPFFSNFMASNGSDYPNNGVMTPSTSIDDPGFLSSKNMSQEVHPSSRNFVKVYKSQSFGRSLDITKFNSYPELRSELDQMFSLDGVLEDPLRSGWQLVFVDRENEILLLGDGPWAEFVNNVWCIKILSPQEVLEMGKPDAKLLNTLSIQRRSGGSCDENVIRQNSRNSSSGLTSVGSLDN 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1827807 1832993 + BLOR03101 Blo11g00225 66425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 6 1 52 - -
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 6 53 153 - -
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 6 154 252 - -
Blo11g00225 696 CDD B3_DNA 93 162 IPR003340 GO:0003677
Blo11g00225 696 MobiDBLite consensus disorder prediction 675 696 - -
Blo11g00225 696 ProSiteProfiles PB1 domain profile. 563 647 IPR000270 GO:0005515
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 251 387 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo11g00225 696 SUPERFAMILY DNA-binding pseudobarrel domain 78 194 IPR015300 -
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 6 251 387 - -
Blo11g00225 696 Gene3D - 92 169 IPR015300 -
Blo11g00225 696 Pfam AUX/IAA family 552 648 IPR033389 -
Blo11g00225 696 Gene3D - 559 652 - -
Blo11g00225 696 Pfam Auxin response factor 191 253 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 6 515 673 - -
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 515 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo11g00225 696 Gene3D - 250 277 - -
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 52 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 53 153 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo11g00225 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 154 252 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo08g00564 Blo11g00225 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00229 Blo-Chr10:3069226 Blo11g00225 Blo-Chr11:1827807 0 dispersed
Blo11g00225 Blo-Chr11:1827807 Blo16g00853 Blo-Chr16:35921520 5.35E-24 dispersed
Blo11g00225 Blo-Chr11:1827807 Blo11g00372 Blo-Chr11:3154567 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12891 PF02309 AUX_IAA 5.50E-06 CL0072 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00225 - - egr:104440759 839.721