Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00227 ATGCCCCGCGTCTCACCGCGGCGATCCACCGATAACTCCTTCAAGCGCTTTGTTTTTTCCAGAGCAGAAACCTTGTATGCGGACGACTTCTCCGACGTTTTTGGCGGTCCGCCTAGGAGCGTTCTGTCGCGGCAATTCTCCGGTGGCTTTGAGCTTAAACAGTCGGATTTTTTCTACGATGAGGTCTTCCAGCCTCCGGAATTCGCTTCTAATGTGACTAACGGCGGAAGGAGCTTGCCGTCGTTTCGGATTCCTGAGAAGGAGGCTGCGTTTTACAGCGATGTATTTGGATCGGACTATGAGAGCCGGTGGAGAGAACGATCGGGCCAGAATTCAAGATCGAAGTCGAATTCTTCATCTATTTTGAGCTCGGAGCCCAGCCCTCTCCGGTCGACGATCGGAGATGACGTCGCCTTCTCTGCCTTTGCTTCAAAGCTTAGACCAATGAATGTTGTTCCATGTGGAGGGAACTCCCCTCAAATGATGCATGAAGAACCCCAAAGGAAACAAGACAGACCAGCTTTTCAATGCAATCGCTCTGCTTACAAAGAAAATCAATTTCCGGGATATGATTTCAAGGAAAGCTTTATAAGCCCGAACAATGGATTTTCACGACACTTGTTGTCTCCTGAAACAATTAGTCTAGAACGTCCAAATTCATATCAAAGTAATAAAGTATCTGCTGATGATGTAGAGGTTAACTCTGCTATATCATCTGCTGCCTCTTCACTATGTCAAGTCCTCGAGGATAAGGCTGCTATGCAAGGTAATGTCATGTCAGAAGAAGATGAAGATGAGGTTATGAGCTCTTATGTTATCGAGATTAACTCGGATTATAGAGCGGAAACTCCAGAACGAGGGGCAGTTGATGAGGCGATTGCTTGGGCGAAGGAGATGTTTCAAAGAAAGACGAGTGAGACAAATTTGAGCTCCGAGTTAAGAGGAGATAACGAGCAGTGTGTTGAAGTGAAAGGAAGTTCTAATTCTAGTGAACTTGCTGAACAACAATTGAATGAAAGTGGAATTAGTCAAGTTTCACAGGTAAAAAGTAATTTTATGAATAAGATATTGACTGATTCCTTCCTGGTATCTTATTTTTTGTCCAAATGGCTTGTTTACTGTACTCTCTTCTGGCTGAGGAACAAGTTTATTATACTTAAACTACAGAAAATAATGGAGAGATTGGATGAAGACATAAAGCTGTGGTCAGGTGGCCAAGAAACCAACATCCGTTTGCTCCTTTCTACCCTGCATCGAATTCTCTGGCCCAATAGTGGGTGGCATGCAATCTCTGTAACAAGTCTAATAGGAACCTCGCAAGTGAAGAAGGCTTATCAGAAAGCAAGATTGTGTCTCCATCCAGACAAGCTGCAGCAAAGAGGAGCAACTGAACCACAAAAATATGTAGCAGAAAAGGCTTTCTCCATTCTTCAGTCTATGATCTCCTCTGTTGGATCTGCATGCATGCAAGAGCATTGTGCTCGAATCGTGATTCTCGACGCGATGGAATGGTTGCGCCGGCGATTCGACGGTTCGGAGCTATCAGAGGTTAACGTGAAGCTTTTGGAGATAAACCATGACCACCAACCCTCTCCGGTGACAACGCCGACGGAACAAGAGAGCGAGTGCACAGTCCGAGAGCAAGACCGGTTCATGCCGATCGCAAACGTGATAAGAATAATGCGCAAAATCCTCCCTCCCCATGCAAAAATCTCCGACGACGCGAAAGAAACGATCCAAGAATGCGTCTCCGAGTACATCAGCTTCGTCACCGGCGAAGCCAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACCATCACCGCCGAGGACGTGCTCTGGGCAATGAGCAAGCTCGGTTTCGACGACTACATCGAGCCTCTCACTCTCTACCTCCACCATTACCGAGAAATGGAGGGCGTCAAAAGAACCGCGGACTATGGCGGAGGAGGAGGAGGATTAGGGCTCTCTACAGCGTTTCATTTAGGCCACCACCGCCATGGGTTTTTGGGGTACTTGAAGGATTCACCTTCTTCTCTGCAAGCCATGCCAAAGGAAGAGCTCCATCCCCAGCCAGCCGGCTATACTATAAGTAATAAATCAGCAAATATAAACTGA 2115 47.04 MPRVSPRRSTDNSFKRFVFSRAETLYADDFSDVFGGPPRSVLSRQFSGGFELKQSDFFYDEVFQPPEFASNVTNGGRSLPSFRIPEKEAAFYSDVFGSDYESRWRERSGQNSRSKSNSSSILSSEPSPLRSTIGDDVAFSAFASKLRPMNVVPCGGNSPQMMHEEPQRKQDRPAFQCNRSAYKENQFPGYDFKESFISPNNGFSRHLLSPETISLERPNSYQSNKVSADDVEVNSAISSAASSLCQVLEDKAAMQGNVMSEEDEDEVMSSYVIEINSDYRAETPERGAVDEAIAWAKEMFQRKTSETNLSSELRGDNEQCVEVKGSSNSSELAEQQLNESGISQVSQVKSNFMNKILTDSFLVSYFLSKWLVYCTLFWLRNKFIILKLQKIMERLDEDIKLWSGGQETNIRLLLSTLHRILWPNSGWHAISVTSLIGTSQVKKAYQKARLCLHPDKLQQRGATEPQKYVAEKAFSILQSMISSVGSACMQEHCARIVILDAMEWLRRRFDGSELSEVNVKLLEINHDHQPSPVTTPTEQESECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFVTGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHHYREMEGVKRTADYGGGGGGLGLSTAFHLGHHRHGFLGYLKDSPSSLQAMPKEELHPQPAGYTISNKSANIN 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1847022 1852128 + BLOR03103 Blo11g00227 66427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00227 704 Gene3D Histone, subunit A 539 648 IPR009072 GO:0046982
Blo11g00227 704 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 551 615 IPR003958 -
Blo11g00227 704 MobiDBLite consensus disorder prediction 111 129 - -
Blo11g00227 704 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 4 483 - -
Blo11g00227 704 Gene3D DnaJ domain 387 486 IPR036869 -
Blo11g00227 704 PRINTS CCAAT-binding transcription factor subunit A signature 598 616 - -
Blo11g00227 704 PRINTS CCAAT-binding transcription factor subunit A signature 617 635 - -
Blo11g00227 704 PRINTS CCAAT-binding transcription factor subunit A signature 579 597 - -
Blo11g00227 704 SUPERFAMILY Chaperone J-domain 388 478 IPR036869 -
Blo11g00227 704 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 483 - -
Blo11g00227 704 MobiDBLite consensus disorder prediction 103 129 - -
Blo11g00227 704 SUPERFAMILY Histone-fold 548 648 IPR009072 GO:0046982
Blo11g00227 704 ProSitePatterns NF-YB/HAP3 subunit signature. 582 598 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00227 - - - csv:101213807 419.853
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00926 Blo11g00227 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01194 Blo-Chr6:35462669 Blo11g00227 Blo-Chr11:1847022 7.89E-13 dispersed
Blo11g00227 Blo-Chr11:1847022 Blo14g00737 Blo-Chr14:19706369 3.62E-105 dispersed
Blo16g00147 Blo-Chr16:3246930 Blo11g00227 Blo-Chr11:1847022 1.57E-18 dispersed
Blo01g00926 Blo-Chr1:21484906 Blo11g00227 Blo-Chr11:1847022 1.15E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g474 Blo01g00926 Blo11g00227 Bda02g00141 . . Bpe01g00839 . Bma01g01518 Cmo13g00544 Cmo18g00467 Cma03g01425 Cma07g00083 Car03g01285 Car07g00078 Sed14g0092 Cpe09g00743 Cpe10g00069 Bhi03g00108 Tan03g0233 Cmetu08g0004 . Hepe04g2018 . . Cla01g02428 Cam01g2543 Cec04g2190 Cco04g2266 Clacu01g2562 Cmu01g2428 Cre04g2089 . . . Cone9ag1089 Lsi01g00122 Csa06g03813 Chy12g00358 Cme08g00114 . . . Bda07g00921 . . . Bma11g00891 Sed14g1596 Cmo03g01421 Cmo07g00086 Cma13g00514 Cma18g00489 Car13g00405 Car18g00460 Cpe19g01154 Cpe20g00541 Bhi08g02029 Tan05g2673 Cmetu12g1930 Lac10g1113 Hepe07g1744 . . Cla03g00610 Cam03g0793 Cec03g0764 Cco03g0796 Clacu03g0655 Cmu03g1249 Cre03g1072 Lsi02g00919 . Chy02g00120 Cme12g01155
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00227 BCT 532 669 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.3 2.6e-51 199.1
Blo10g00864 . 17 182 CCAAT-HAP3 Transcription Factor Family AT5G47670 51.2 8.6e-39 157.5
Blo02g00141 . 12 116 CCAAT-HAP3 Transcription Factor Family AT5G47670 66.4 2.1e-37 152.9
Blo11g00227 BCT 514 653 CCAAT-HAP3 Transcription Factor Family AT1G21970 57.3 1.6e-45 179.9
Blo13g00735 . 9 136 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.0 8.2e-37 151.0
Blo15g00440 CCT,ECH 1 169 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.0 2.6e-58 221.9
Blo02g00141 . 1 167 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.3 1.4e-56 216.1
Blo10g00864 . 1 157 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.3 1.5e-53 206.1
Blo03g00464 . 1 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.4 8.2e-49 190.3
Blo04g00306 . 648 763 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 8.0e-44 173.7
Blo13g00735 . 11 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 8.0e-44 173.7
Blo12g00456 . 22 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.2 4.0e-43 171.4
Blo04g00929 . 19 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.8 2.6e-42 168.7
Blo11g00227 BCT 544 643 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.0 2.5e-37 152.1
Blo13g00735 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.8 1.4e-50 196.1
Blo04g00306 . 638 753 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 1.2e-49 193.0
Blo12g00456 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.6 6.0e-49 190.7
Blo15g00440 CCT,ECH 1 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 8.4e-43 170.2
Blo10g00864 . 19 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.9 3.2e-42 168.3
Blo02g00141 . 21 111 CCAAT-HAP3 Transcription Factor Family AT2G38880 83.5 3.2e-42 168.3
Blo03g00464 . 23 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 5.4e-42 167.5
Blo04g00929 . 9 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.5 6.6e-40 160.6
Blo03g00464 . 21 120 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 3.4e-39 158.3
Blo05g00317 . 110 207 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.6 7.7e-39 157.1
Blo10g00864 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 2.2e-38 155.6
Blo15g00440 CCT,ECH 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 8.5e-38 153.7
Blo02g00141 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 1.1e-37 153.3
Blo12g00456 . 1 156 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.7 3.4e-56 214.9
Blo13g00735 . 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.7 1.1e-54 209.9
Blo04g00306 . 648 770 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.3 1.4e-54 209.5
Blo15g00440 CCT,ECH 6 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.8 1.6e-45 179.5
Blo03g00464 . 1 126 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.7 2.7e-45 178.7
Blo02g00141 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.1 4.5e-45 177.9
Blo10g00864 . 17 144 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.2 2.3e-44 175.6
Blo04g00929 . 22 114 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.3 1.2e-37 153.3
Blo15g00440 CCT,ECH 1 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.5 1.5e-45 179.9
Blo02g00141 . 9 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.9 1.9e-45 179.5
Blo03g00464 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.1 1.4e-43 173.3
Blo04g00929 . 3 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.0 1.4e-43 173.3
Blo10g00864 . 21 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 2.0e-42 169.5
Blo12g00456 . 24 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 1.9e-40 162.9
Blo04g00306 . 663 757 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 1.2e-39 160.2
Blo13g00735 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 1.2e-39 160.2
Blo05g00317 . 112 210 CCAAT-HAP3 Transcription Factor Family AT2G13570 70.7 1.3e-36 150.2
Blo10g00864 . 1 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.8 4.7e-51 198.0
Blo15g00440 CCT,ECH 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.0e-50 196.8
Blo02g00141 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 2.0e-49 192.6
Blo03g00464 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.6 4.8e-48 188.0
Blo04g00306 . 663 773 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.7e-43 172.2
Blo13g00735 . 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.4 2.7e-43 172.2
Blo12g00456 . 19 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.7 2.3e-42 169.1
Blo04g00929 . 17 126 CCAAT-HAP3 Transcription Factor Family AT5G47640 73.6 2.6e-41 165.6
Blo12g00456 . 16 156 CCAAT-HAP3 Transcription Factor Family AT3G53340 80.4 6.2e-58 220.7
Blo04g00306 . 638 794 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 3.8e-55 211.5
Blo13g00735 . 1 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 78.8 2.4e-54 208.8
Blo15g00440 CCT,ECH 6 138 CCAAT-HAP3 Transcription Factor Family AT3G53340 68.4 4.6e-45 177.9
Blo02g00141 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.1 7.9e-45 177.2
Blo03g00464 . 7 135 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.9 6.7e-44 174.1
Blo10g00864 . 17 115 CCAAT-HAP3 Transcription Factor Family AT3G53340 76.9 3.7e-42 168.3
Blo04g00929 . 22 120 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 4.2e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004312 3 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12892 PF00808 CBFD_NFYB_HMF 4.10E-25 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00227 Blo_Chr11 FPKM 0.323432 0.0 0.0 0.308009 1.527294 1.163481 1.149239 0.234026 0.209943 0.292638