Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00264 ATGGATGAAGCGCTGGAAAGCTCGATTTCGTTGCCCCCTTTTCTCTCGAAGACATATGAAATGGTGGATGATTCTTCCTGCGACTCCATCGTTTCATGGAGTTCGAGTAATAAAAGTTTCGTTGTGTTGAATCTGCCTGATTTCGAGAGAGTTTTGCTTCCGAGGTTCTTCAAGCATAGCAACTTCTCCAGCTTCAATCGGCAGCTCAATACATACGGTTTTAGGAAAATCGATCCTGAGCAATGGGAGTTTGCTAATGAGAATTTTATAAAAGGTCAACCACATCTGTTGAAGAACATTCACAGAAGAAAACCAGTACACAGCCATTCTTTGCAGAATTTCTCTGCTCAAGGAACTTCTCCATTGACTGAATCTGAAAGGCAGAGCTATAAGAAAGATATTGAGAGGCTAAAGCAGAACAAAGAACGGCTTCTTCTAGAGCTTCAGAGGCATGAAAAAGATAGAGAGAGATTTGAATTGAAAATTCAGCTGTTGAATGAACGATTGCAAGAACATCAGAACAAATTGGTCGCTTTTTTGGCTCGAGTCCTGCAAAATCCAAGTTTGGATTTGAATTTTCTGCCACAATTAGAATTCCATGACAGAAAGAGGAGGCTACCTAGAACTAATTTCTATCAGAATGAAATCAGCGATGAAGATAATCAAATGGGGACAACCCAATCTGGGTCATTAAACCTGGAGCGATTCGAGCTTCTCAAGACATCCTTAGCATTTTTGGAGAACGTTGTTCTTGAGGTTCGCGAAACTTCCAACATCGAGTTAGATGAATCCACAACCTTCTCTGAAAGCCCATCCATATCCGAAATTCTACTTAATGTTAGTGACAGATCTAAATCTCCCGGAATCGACATGAACTCAGAGCCCGTTGCAGTGATTTCTTCCAGTCCCAATGCCTTAAACGAACACCCCACCTTGGCCACCGGCGTTAATGACATTTTTTGGGAGCAGTTTTTGACTGAAAATTCGGGTTCTTTTGACTCACAGGAAGTTCAATCTGAAAGAAAGGATTCTGATCCCACAAAGGGTGAAACCAAAGTCAAAGATCATGGGAAATTTTGGTGGAATAGGAGGACTGTAAACAACCTTACACAACGAATCGGCCATCTTACTCCGGTTGAGAAAACTTAA 1149 41.43 MDEALESSISLPPFLSKTYEMVDDSSCDSIVSWSSSNKSFVVLNLPDFERVLLPRFFKHSNFSSFNRQLNTYGFRKIDPEQWEFANENFIKGQPHLLKNIHRRKPVHSHSLQNFSAQGTSPLTESERQSYKKDIERLKQNKERLLLELQRHEKDRERFELKIQLLNERLQEHQNKLVAFLARVLQNPSLDLNFLPQLEFHDRKRRLPRTNFYQNEISDEDNQMGTTQSGSLNLERFELLKTSLAFLENVVLEVRETSNIELDESTTFSESPSISEILLNVSDRSKSPGIDMNSEPVAVISSSPNALNEHPTLATGVNDIFWEQFLTENSGSFDSQEVQSERKDSDPTKGETKVKDHGKFWWNRRTVNNLTQRIGHLTPVEKT 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2131262 2132614 + BLOR03140 Blo11g00264 66464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00264 382 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo11g00264 382 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo11g00264 382 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo11g00264 382 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 363 IPR027725 -
Blo11g00264 382 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo11g00264 382 Gene3D - 7 104 IPR036388 -
Blo11g00264 382 SUPERFAMILY Winged helix DNA-binding domain 10 103 IPR036390 -
Blo11g00264 382 Coils Coil 127 182 - -
Blo11g00264 382 MobiDBLite consensus disorder prediction 336 354 - -
Blo11g00264 382 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo11g00264 382 MobiDBLite consensus disorder prediction 331 354 - -
Blo11g00264 382 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00264 K09419 HSFF; heat shock transcription factor, other eukaryote - pop:7463811 475.322
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00868 Blo11g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00264 Blo-Chr11:2131262 Blo15g00590 Blo-Chr15:13401581 1.47E-72 dispersed
Blo01g00868 Blo-Chr1:16897425 Blo11g00264 Blo-Chr11:2131262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g260 Blo01g00868 Blo11g00264 . . . . Bma14g00978 Bma01g01469 Cmo13g00611 . . Cma07g00159 . Car07g00139 . . . . . . . . . . Cla01g02342 Cam01g2455 Cec04g2104 Cco04g2180 Clacu01g2475 Cmu01g2342 Cre04g2010 . Cone5ag1639 . . Lsi01g00219 Csa06g03726 Chy12g00055 Cme08g00202 . . . Bda07g00962 . . . . Sed08g2732 . Cmo07g00157 Cma13g00581 . Car13g00464 . Cpe19g01087 Cpe20g00480 Bhi08g02149 Tan05g2532 Cmetu12g1147 Lac10g0985 Hepe07g1835 . . Cla03g00695 Cam03g0699 Cec03g0671 Cco03g0708 Clacu03g0743 Cmu03g1335 Cre03g0980 Lsi02g00833 Csa01g02297 Chy02g00208 Cme12g01263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001764 2 9 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 2 5 4 2 69
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12895 PF00447 HSF_DNA-bind 2.90E-29 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00264 Blo_Chr11 FPKM 0.237405 0.102365 13.92704 14.189318 16.922792 17.601048 14.65084 0.820014 0.208821 0.088004