Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00265 ATGGCTACTGCAGCAATATTCTCGTCGTTGCGGCGGCGAAGATCGCCGTCTTTAGAGGTTTTATTAGCTCCTGTCGACCTCAATGATGAAGCGCTTGTACAAACGCTTGCCTCGGTCGCCGCCGATCTCGTTTCGGGTTTTATACAGAAATCGTTCTTCTTTCAGCGCAAGAATTCGAGGTCTCTGCTACGGAAAATGGACGTTTTTCTCGTGTTCTTGCAGTATTTGAAGGATTCCGGCGCGAGTTTGCCTTACACGGCAGTGATTTGCTTCAAAGAGCTTTACTTGTTACTGTATCGATCGAAGATCCTCTTCGATTATTGTTCTCAATCGTGTAAGTTATGGCTATTGCTTCAAAATCATCCTATTTCAGTGCATTTCCATGATTTAAACCTGGAAATTTTGACCATTCTGGACGTGTTTCCTTTTGACGAAGTTAAATTGGATGTAGACATTAGAGAGCAGATTAAGCTATTACAGAACCAACTGAGAAGGGAGGAATTGTACATAGAGAAGCATGATGAAGTGCTGAGAATTCAGTTTCTTTCATTTCTCCATGATTTTGAGGATGGAAAGATTCCGGATTCTGGGAAAATGAAAGAGTTCTTTGTGGAAAGGTTGGAGATAAAGACTGCAAACACTTGCAGAGCTGAAATTGAACATTTGGAAGAGCAGATTGTGAATCACGAGGGAGATATCGAGCCAACAATATCGGTTCTTAGCGGATTTGTTGCACTTACACGATATAGTAGATTTTTACTATTTGGGTTTGATGGAGAAGAATTAGAATCAAGCGATAGAAATCGGAAGAAGAGAAATAGGTTGATTACGCAAGAAATTGCAGAAACTTTCGTAACAATCCCAAAGGATTTTTGCTGTCCAATCTCACTGGAATTGATGACAGACCCAGTGATTATAGCAACAGGACAGACATATGATCGGAGTTCAATAGCTCGGTGGATTGAAGAAGGGCATTGTAATTGTCCGAAAACGGGGCAAATGCTTGTCCACACTAATCTTGTTCCAAATCGAGCTCTGAGGAATTTGATCATGCAGTGGTGCTCAGCCCATGGAGTTGCTTATGATCCACCAGAAGGCATGGATTCTTCTGCAGAAAAGTTTGCTGCAGCTTCCTCCTATAGAGCTGCAGTGGAGGCCAACCGAGCAACAACTCAGCTTCTGATCCAACAGCTTGCAAATGGGTCACAAGAGGGGAAGACCATAGCTGTGCAAGAAATACGATTATTGGCAAAAACGGGAAAAGAAAATCGTGCCTTCATTGCAGAAGCCGGGGCCATTCCCCATCTTCTAAATCTGCTTTCTTCTCCAAACCATGTTGCTCAAGAGAACTCAATCACTGCGATGCTTAATCTTTCGATCTACGACAAGAACAAGAGCCAAATCATGGAGGAAGAAGGGTGTTTAAGATCGATAGTAAGGGTTCTGAAGTTGGGAAAAACGATAGAAGCGAGAGAAAATGCGGCAGCTACGTTGTTCAGCCTTTCAGCTGTTCATAACTACAAGAAAAGAATAGCCGATGAGGAGGGGGCTGTAGAGTGCTTAGCAGGGCTGCTAAAAGAGGGAACTCGGAGAGGGAAAAAAGATGCGGTGACGGCCTTGTTTAATCTTTCAACTCATGCCGAAAATTGTGCAAAATTGATTTCAGCCGGTGCAGTGAAAGCGCTAGTTGGTGCACTGACAAATGATGGGGTGGCAGAGGAAGCAGCAGGGGCTTTAGCCTTGATTGTCCATCAACCCACCGGAGCCCAGGCTGTGGGGGAGGAGGAATTATCGGTAGGCGGGTTGACATCAATGATGAGATGTGGAACACCAAGAGGGAAAGAGAATGCAGTGGCGGCTCTGCTTGAGCTTTGCCGGACTGGCGGAGCGGCTGCAACTGCGAGGGTGGTAAGCGCTCCGGCTTTAGCCGGCTTGCTCCAAACCCTCTTGTTTACAGGCACAAAACGGGCGCGTAGAAAGGCCGCTTCTCTTGTGAGAATGTTTCGAAGGTGTGAAAATATCACCTTGCATTATAGTGAATTGGGGGTCGGATACGCATTTTCAAGCAATTCAGCTGCAGGTAGAGAGTCGAGCATCGTCGGAGATATGTCGGTTGTGTCGTCGATTCCCATTTCAGTGTCGGTTTTGTAG 2151 45.37 MATAAIFSSLRRRRSPSLEVLLAPVDLNDEALVQTLASVAADLVSGFIQKSFFFQRKNSRSLLRKMDVFLVFLQYLKDSGASLPYTAVICFKELYLLLYRSKILFDYCSQSCKLWLLLQNHPISVHFHDLNLEILTILDVFPFDEVKLDVDIREQIKLLQNQLRREELYIEKHDEVLRIQFLSFLHDFEDGKIPDSGKMKEFFVERLEIKTANTCRAEIEHLEEQIVNHEGDIEPTISVLSGFVALTRYSRFLLFGFDGEELESSDRNRKKRNRLITQEIAETFVTIPKDFCCPISLELMTDPVIIATGQTYDRSSIARWIEEGHCNCPKTGQMLVHTNLVPNRALRNLIMQWCSAHGVAYDPPEGMDSSAEKFAAASSYRAAVEANRATTQLLIQQLANGSQEGKTIAVQEIRLLAKTGKENRAFIAEAGAIPHLLNLLSSPNHVAQENSITAMLNLSIYDKNKSQIMEEEGCLRSIVRVLKLGKTIEARENAAATLFSLSAVHNYKKRIADEEGAVECLAGLLKEGTRRGKKDAVTALFNLSTHAENCAKLISAGAVKALVGALTNDGVAEEAAGALALIVHQPTGAQAVGEEELSVGGLTSMMRCGTPRGKENAVAALLELCRTGGAAATARVVSAPALAGLLQTLLFTGTKRARRKAASLVRMFRRCENITLHYSELGVGYAFSSNSAAGRESSIVGDMSVVSSIPISVSVL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2133854 2136004 - BLOR03141 Blo11g00265 66465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00265 716 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Blo11g00265 716 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Blo11g00265 716 SMART arm_5 546 584 IPR000225 GO:0005515
Blo11g00265 716 SMART arm_5 505 545 IPR000225 GO:0005515
Blo11g00265 716 SMART arm_5 462 503 IPR000225 GO:0005515
Blo11g00265 716 SMART arm_5 420 460 IPR000225 GO:0005515
Blo11g00265 716 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 696 - -
Blo11g00265 716 Gene3D - 370 546 IPR011989 -
Blo11g00265 716 CDD RING-Ubox_PUB 291 333 IPR045210 -
Blo11g00265 716 SUPERFAMILY ARM repeat 391 671 IPR016024 -
Blo11g00265 716 Coils Coil 212 232 - -
Blo11g00265 716 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
Blo11g00265 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Blo11g00265 716 SUPERFAMILY RING/U-box 276 361 - -
Blo11g00265 716 PANTHER U BOX DOMAIN-CONTAINING 12 696 - -
Blo11g00265 716 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Blo11g00265 716 Gene3D - 547 680 IPR011989 -
Blo11g00265 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 362 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01030 Blo-Chr1:32165547 Blo11g00265 Blo-Chr11:2133854 2.69E-142 dispersed
Blo04g00162 Blo-Chr4:1311242 Blo11g00265 Blo-Chr11:2133854 2.64E-133 dispersed
Blo11g00265 Blo-Chr11:2133854 Blo03g01130 Blo-Chr3:37761378 2.19E-105 dispersed
Blo11g00265 Blo-Chr11:2133854 Blo13g00851 Blo-Chr13:31131878 2.36E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00265 - - mnt:21388341 1001.5