Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00324 ATGGGTAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAAATAAACAGGCAGGTTACTTTCGCAAAGAGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCAGCCGTGGAAAACTCTATGAGTTCTGCAGCACCTCTAACATGCTCAAAACGCTGGAAAGGTACCAAAAATGTAGCTATGGGGCAGTGGAAGTCAGCAGACCCAACAAGGAGCTTGAGAGTAGCTACCGAGAATACTCGAAACTCAAAGCTAAGCTCGAGTCTCTGCAAAGAACTCAAAGAAACATTATTGGAGAGGATTTAGGTTCACTGAATTCAAATGAGCTTGAGCGGCTTGAATGTCAACTGGAGGCATCCCTCAAGCAAGTTAGGTCAACAAGGACACAGACTATGCTTGACCAGCTTTCAGATCTTCAAAACAAGGTACAATATTTGCTTCAACTAAGAATCAATGGTGAGCAGCTGCTGGGTGAAGCAAATAGATGTCTGAATATAAAGCTGGATGAGATTAGTTCTAGAAACCATCTGCGGCAGCCATGGGAGGGTGGTGGGCAATGCATTTCATATGCTCCTCAAAATGCTGAGTCTCAGGCCTTCTTCCAGCCTCTAGACTGCAATCCCACTTTGCAAATTGGCTATACAGCTTCAGTTTCAGACCAGATCACTGCTACCACCATGGCTACAACCTCTCATTCCCATCCAGTCAATGCATTCATTCCAGGTTGGATGCTTTGA 780 45.0 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIVFSSRGKLYEFCSTSNMLKTLERYQKCSYGAVEVSRPNKELESSYREYSKLKAKLESLQRTQRNIIGEDLGSLNSNELERLECQLEASLKQVRSTRTQTMLDQLSDLQNKVQYLLQLRINGEQLLGEANRCLNIKLDEISSRNHLRQPWEGGGQCISYAPQNAESQAFFQPLDCNPTLQIGYTASVSDQITATTMATTSHSHPVNAFIPGWML 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2653451 2656769 + BLOR03200 Blo11g00324 66524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00324 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo11g00324 259 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 242 - -
Blo11g00324 259 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Blo11g00324 259 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 242 - -
Blo11g00324 259 Coils Coil 84 114 - -
Blo11g00324 259 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo11g00324 259 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo11g00324 259 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo11g00324 259 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Blo11g00324 259 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo11g00324 259 ProSiteProfiles K-box domain profile. 87 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo11g00324 259 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Blo11g00324 259 Coils Coil 124 144 - -
Blo11g00324 259 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo11g00324 259 Pfam K-box region 85 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo11g00324 259 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo11g00324 Blo17g00396 CCT
Blo11g00324 Blo17g00396 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00324 Blo-Chr11:2653451 Blo11g00805 Blo-Chr11:12765549 1.53E-50 dispersed
Blo16g01080 Blo-Chr16:39355703 Blo11g00324 Blo-Chr11:2653451 7.37E-16 dispersed
Blo11g00324 Blo-Chr11:2653451 Blo17g00396 Blo-Chr17:4438325 3.99E-121 wgd
Blo11g00324 Blo-Chr11:2653451 Blo18g00414 Blo-Chr18:4509735 6.15E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12898 PF01486 K-box 3.90E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00324 K09264 - qsu:112023853 379.407