Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00470 ATGGCTTCCCAGCAGGGCGATCCCGTCTTCCCCGACGAGGACCTCGACGATGAGGAGGACTCTATGGACGAGGACGAGGACGAAGACGACGACGACGAAGAGCTGAACGGTGATGTTTTGGTCGATGACGATGTCAATTCCGCCTCTCCTTCTACTTCCTTCGGCGGTGCGGTTGTTGTTCCTGATGCTTCGGTTTCTGTAGCTGTCGCCGGTTCGGTTTTAGGTCATTCTGTGCCTAACGGTGATCCTCCGGTTTCCACCGTCTCCGTCGTCAATGTTTCTAGCTCTAATTCGCAGCGGCAGCGATTTGAGAGTACGGTTACCGAGCCGTTGATTGTGCAGGAGGAGAAGAAACCGATAGATGAGGCTCGGAGGCTGTTTCAGAGACTGTGGACGGATGAGGATGAGATCGGTCTCCTGCAAGGATTTCTTGATTATACCGTGAATCGAGGTTCTACTCATCATCATCAATATGATACCGCTTTGTTCTACGACCAGATCAAGTCGAAGCTTCAGTTGGATTTCAACAAAAATCAGCTGGTGGAGAAGCTCCGTAGGTTGAAGAAGAAGTACCGTAACGTCATGGAAAAGATTAATTCAGGAAAAGAATTCAATTTTAAAAGCCCTCACGATCAAGCCACCTTTGAGATCTCCCACAAGATCTGGAGCAACATCGTTCGAACAGGTGTAGATGATAACGCTCTAGACGATGATGATCCAAATCCTATTTCCAATCATTTCGAAATCAAAGATGAGGAATTTGCGGGGAATAGTGGAGAGAAAAGGACTTCGACCGCATCAAGATCAGGGAAACGTTCAAGATGCAAAGCTGGATTGCAAACTATCGATACACGCCCATCTTATGAGACTCTGAACAAGGATAAAAATAGTTGTCATAATAGCAATATGAGTAACATGACTGGGTTGATTGAAGAGACTGTGAGGAGTTGCTTATCGCCTTTGTTTAAGGAGTTGTTGAATAATGCGGTGGGCGGCACTTGTGGGGCAAGAGGTTTAGGTGGATTGGCATTGAATGCAATGCCATTGAGCTTTGGTGGGTCGTTCAAGAATGGAGGGGAAATCACAGACGAGAGATGGAGAAAACAGCAGATACTAGAGCTGGAGGTTTTTTCGAAGCGCCTGGAGTTAGTACAGGATCAAATTAAGACTACATTGGAAGAGTTGCGGTTGATGGATGGAGATGCAAAAAGGCGATAA 1218 46.8 MASQQGDPVFPDEDLDDEEDSMDEDEDEDDDDEELNGDVLVDDDVNSASPSTSFGGAVVVPDASVSVAVAGSVLGHSVPNGDPPVSTVSVVNVSSSNSQRQRFESTVTEPLIVQEEKKPIDEARRLFQRLWTDEDEIGLLQGFLDYTVNRGSTHHHQYDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMEKINSGKEFNFKSPHDQATFEISHKIWSNIVRTGVDDNALDDDDPNPISNHFEIKDEEFAGNSGEKRTSTASRSGKRSRCKAGLQTIDTRPSYETLNKDKNSCHNSNMSNMTGLIEETVRSCLSPLFKELLNNAVGGTCGARGLGGLALNAMPLSFGGSFKNGGEITDERWRKQQILELEVFSKRLELVQDQIKTTLEELRLMDGDAKRR 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4224039 4225256 + BLOR03346 Blo11g00470 66670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00470 405 PANTHER BNAANNG10740D PROTEIN-RELATED 1 399 IPR007592 GO:0006355
Blo11g00470 405 MobiDBLite consensus disorder prediction 1 57 - -
Blo11g00470 405 MobiDBLite consensus disorder prediction 252 277 - -
Blo11g00470 405 Pfam Protein of unknown function, DUF573 127 223 IPR007592 GO:0006355
Blo11g00470 405 Coils Coil 177 197 - -
Blo11g00470 405 MobiDBLite consensus disorder prediction 10 40 - -
Blo11g00470 405 PANTHER BNAANNG10740D PROTEIN 1 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00470 - - - cmax:111495335 386.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00328 Blo-Chr10:4940128 Blo11g00470 Blo-Chr11:4224039 1.11E-46 dispersed
Blo10g00330 Blo-Chr10:4946993 Blo11g00470 Blo-Chr11:4224039 0 dispersed
Blo11g00470 Blo-Chr11:4224039 Blo04g00674 Blo-Chr4:6044162 3.21E-12 dispersed
Blo01g00818 Blo-Chr1:12811213 Blo11g00470 Blo-Chr11:4224039 5.34E-26 transposed
Blo11g00470 Blo-Chr11:4224039 Blo17g00596 Blo-Chr17:11656196 1.02E-134 wgd
Blo11g00470 Blo-Chr11:4224039 Blo18g00580 Blo-Chr18:8533054 1.52E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00470 . 113 327 GeBP Transcription Factor Family AT3G04930 51.2 7.7e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12916 PF04504 DUF573 2.10E-33 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00470 Blo_Chr11 FPKM 3.218782 1.925102 76.519051 79.644119 10.074153 12.30584 10.392322 1.029984 1.104537 0.898994