Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00489 ATGAGTGTCAGCCACAAGCCAGAAGACGGAAGAAAGGAAGTCGACGGAAGACAGAATTACAAACCGAGCTGGCGACTGGCAAGCTCTCAGTCGACGGAAGGAAGTCGAAACTCGGAAGACGCCTGGAAGACGGAAGACGTCAAGAGGAACGCCTGGAACGCCGTTCGGGTGGGGGATCGGGAGTCGGGAGACTCAAGTCTCGGGAGTCGGGAGGTCGGAGGGGAGAGCTCGGGACTGGAGTCGGATGTCGCCTGTGTGTCTACTGTACATATAGACGCACAGGGAGGTAGAGTGGAAGTAACAGGGAATTTCGACCCTCAAAATCTCACAAAAAAGCTTGAAAAATCAGGGAAATGTTCAGAGATGATGGAGGCTCAGAAAAGTTCAAAAAGTATTAAGAGCGCCGCCCAGTCTGAGAGGAGTCAGAGTGGAAAAAGCAAAGCGGGGGGAAGTTATAAATCTCAAAATAGTTTGAAGAGTGGAGGAGAAGCACATTCTCATAAAGGGTCTAAGGCTCTGACTTCTGCTTCAATGGAGAACAAAAGTGTCAAAAAGTTTGACTTGACTGATTTGGAAAGTAAGAGAAGTGGTAAAAGCAGAGGAAGTGAATTTGGCGGGGGTAAAAATGGGCGAAACGGAGGGCTTTTTGGTTTTGGAAAGTTTTTTGGTTTTGGAAAGCTTTTTGGTTTTGGTAAAAATGGGGGAGAAAAGGGACCTAAACCTTCTTCCAGGAAGAGTCACAGTGAAAGAGGAGGAAAAACACTCCATGGAGGATCGATCAAAAAGGGTTCATCAAGAAAAGATGAACCCTTACCGTTCCATCCACCGGCAAGTGATTTTCATGGTTCTGAGGTCGCACACTCCTCCGCCGGGAACAGCTCCGTCGGCCGTAGCAGTAGAGGTGGAAGTAAAAAGTCAAGTAAGAAGAGCCAAATGAGCCATCACAGTGGAGAGAAGGCAAGCCAAGTGGATGATATTTCATTGGTTCAAGATCATGAACACTCCATCGCCAGGAACAGCTCCGTCGGCCGGAGCAGTAGAGGTGGAAGTAAAAAGGGGAGTAAGAGGAGTCCGATGAGTCATCACAGTGGAGAGAAGAGAAGTCAAATGGGCGATCCTTACAATCAACAAGATTTGCATATGACGATGATGATGAACCAAAGAAGGTATTACGATGCGCCACATCGGCCAACGTCGCCGCCGGCAGCGCATCGGGAATCTTACGAACACTATTTCAGCGATGAGAATGCAAATGCGTGTCAGCATAACTATGAACATATCAGCAGATTTGAAATCATTATTTACCTGGAACACAAAGCAGAATCTGCTGAACTTATTATGGATCCTCAAGGACCAAGCCAACCTCCGTCGATGGGGGTGGTCGGGGGTGGGCTTCAATTTCCATATGGTTCGAGTTTTTATGAGCCGAACCAGATCGCCGGAACTCAAAGTGCAGGGCCGATGATTGGAGCCGTTCAATCCACAAGCCAGCCTGGGGGACCCCAGCTAGCGTATCAGCAGATGCACCAACAACTCCTGCAGCAGCTCCAGAACTTCTGGGAGAATCAGAGCCGTGAAATCGAAAAGGTGACCGATTTCAAGAACCATAGCCTCCCATTGGCCAGGATCAAGAAGATCATGAAGGCGGACGAAGATGTTCGGATGATCTCAGCCGAGGCCCCCGTCGTGTTTGCCAGGGCATGTGAAATGTTCATCTTGGAACTGACCCTCCGATCATGGAATCACACGGAGGAGAATAAACGCAGGACGCTCCAGAAGAACGACATTGCAGCTGCAATCACAAGAACTGATATCTTTGACTTTTTGGTCGACATTGTCCCGAGGGACGATCCGAAAGACGAAGTGCTCGCCTCTTTCCCTCGGGGAGCCATGCCAGTTGGGGCCCCAGTCGATGGGATCCCATACGACCACATGCCGCCTCAGCATCCAGGGATGATGGCAGGGATGTATGCCCCTCCACCTCACACCTACATGGTCCCGCAAATGTGGCCCCACGTACCTGATCAACATCAATCGAGTTCCGATCAGTAG 2052 49.85 MSVSHKPEDGRKEVDGRQNYKPSWRLASSQSTEGSRNSEDAWKTEDVKRNAWNAVRVGDRESGDSSLGSREVGGESSGLESDVACVSTVHIDAQGGRVEVTGNFDPQNLTKKLEKSGKCSEMMEAQKSSKSIKSAAQSERSQSGKSKAGGSYKSQNSLKSGGEAHSHKGSKALTSASMENKSVKKFDLTDLESKRSGKSRGSEFGGGKNGRNGGLFGFGKFFGFGKLFGFGKNGGEKGPKPSSRKSHSERGGKTLHGGSIKKGSSRKDEPLPFHPPASDFHGSEVAHSSAGNSSVGRSSRGGSKKSSKKSQMSHHSGEKASQVDDISLVQDHEHSIARNSSVGRSSRGGSKKGSKRSPMSHHSGEKRSQMGDPYNQQDLHMTMMMNQRRYYDAPHRPTSPPAAHRESYEHYFSDENANACQHNYEHISRFEIIIYLEHKAESAELIMDPQGPSQPPSMGVVGGGLQFPYGSSFYEPNQIAGTQSAGPMIGAVQSTSQPGGPQLAYQQMHQQLLQQLQNFWENQSREIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDPKDEVLASFPRGAMPVGAPVDGIPYDHMPPQHPGMMAGMYAPPPHTYMVPQMWPHVPDQHQSSSDQ 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4507897 4520959 + BLOR03365 Blo11g00489 66689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00489 683 MobiDBLite consensus disorder prediction 94 212 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 22 37 - -
Blo11g00489 683 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 447 683 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 238 274 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 38 55 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 285 301 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 230 374 - -
Blo11g00489 683 Gene3D - 73 127 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 1 82 - -
Blo11g00489 683 Gene3D Histone, subunit A 502 615 IPR009072 GO:0046982
Blo11g00489 683 MobiDBLite consensus disorder prediction 1 19 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 333 348 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 311 332 - -
Blo11g00489 683 SUPERFAMILY Histone-fold 515 609 IPR009072 GO:0046982
Blo11g00489 683 MobiDBLite consensus disorder prediction 183 201 - -
Blo11g00489 683 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 447 683 - -
Blo11g00489 683 MobiDBLite consensus disorder prediction 122 163 - -
Blo11g00489 683 Pfam Core histone H2A/H2B/H3/H4 519 600 IPR007125 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00489 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - qsu:111987198 313.923
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00358 Blo-Chr1:4246554 Blo11g00489 Blo-Chr11:4507897 3.18E-06 dispersed
Blo02g00974 Blo-Chr2:37752041 Blo11g00489 Blo-Chr11:4507897 7.35E-23 dispersed
Blo02g01102 Blo-Chr2:41983933 Blo11g00489 Blo-Chr11:4507897 1.22E-29 dispersed
Blo04g01166 Blo-Chr4:20154829 Blo11g00489 Blo-Chr11:4507897 1.49E-56 dispersed
Blo11g00489 Blo-Chr11:4507897 Blo13g00597 Blo-Chr13:28401234 1.04E-63 dispersed
Blo11g00489 Blo-Chr11:4507897 Blo04g00467 Blo-Chr4:3880174 5.28E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 82.2 1.7e-82 302.8
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.4 3.8e-71 265.0
Blo04g00467 . 48 199 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.3 2.0e-56 216.1
Blo13g00597 . 145 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.1 1.1e-49 193.7
Blo11g00489 . 516 673 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.8 2.7e-48 189.1
Blo11g00489 . 469 614 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.5 7.1e-54 207.6
Blo04g00467 . 25 222 CCAAT-HAP5 Transcription Factor Family AT1G08970 59.4 5.9e-48 188.0
Blo13g00597 . 89 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.7 2.2e-47 186.0
Blo16g00273 . 38 136 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.4e-41 166.0
Blo04g01166 . 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 9.1e-41 164.1
Blo11g00489 . 494 670 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.3 3.4e-58 221.9
Blo04g00467 . 47 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 1.4e-54 209.9
Blo13g00597 . 91 275 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 3.4e-50 195.3
Blo04g01166 . 35 199 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.1 2.2e-49 192.6
Blo16g00273 . 38 175 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 4.2e-48 188.3
Blo04g01166 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 75.3 1.4e-74 276.6
Blo16g00273 . 38 222 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.6 8.2e-64 240.7
Blo04g00467 . 48 204 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 4.2e-52 201.8
Blo13g00597 . 145 274 CCAAT-HAP5 Transcription Factor Family AT5G63470 68.9 1.6e-46 183.3
Blo11g00489 . 516 620 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.9 2.5e-44 176.0
Blo04g00467 . 23 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.8 6.6e-64 240.7
Blo13g00597 . 110 273 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 6.8e-61 230.7
Blo11g00489 . 491 636 CCAAT-HAP5 Transcription Factor Family AT1G56170 65.8 1.3e-48 189.9
Blo04g01166 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 1.7e-48 189.5
Blo16g00273 . 38 161 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.9e-48 188.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12917 PF00808 CBFD_NFYB_HMF 2.00E-17 CL0012 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00489 Blo_Chr11 FPKM 0.934272 0.0 1.665973 1.624027 0.138699 0.0 0.304864 0.732872 1.978894 1.740336