Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00538 ATGGTTTGCCAAGAAGAGCCTTTGGTACGCAAAATCTGCGAACTGTACGACCAAATCTCAAACCTAGAGAACCTCAAACCTTGCAAAAATGTCGACATACTCTTCACCCAGCTGGTGCTGACTTGCATGCAGCCAAGCCCTATTGATGTAGCCAAACTTTGCACGAGGGTTCAGCAAATCAGAGCCAAACTCATTCAGCTCTGCGCTGAGGCAGAGGGTCTTTTAGAAAGCCATTTCTCGACCATCTTAGCCTCTTTTAAAAACCCACTTCAAAATCTCGACCTTTTCCCTTATTATTCCAACTACCTCAAACTTAGCCTTCTTGAGTTCAATATTCTTACAGATCATTGCCAATACCCACCCTCCAAACTTGCTTTTATCGGTTCAGGATCACTTCCTCTCACCTCCATTGTTTTAGCCCTTAATCACCTCCCCTCCACCATTTTTCACAACTATGATATCGACCCATCAGCCAAGTCAAAGGCTTTCTCTTTGATTTCAACTCATCCTGATTTGTCAAAAAGAATGTTTTTTCACACTGCAGATATAATGAACGTTACCAATGCTTTGAAAGAGTATCAAGTCGTGTTTTTAGCTGCTTTAGTTGGTATGAACAAGGAAGAGAAAGCTAAAGTTATAGACCATTTGTGCAAGTATATGGCTCCTGGAGCTTATCTGATGGTTCGAAGCGCTCATGGAGCAAGGGCTTTTCTGTACCCAGTTGTTGATTTTGTTGATCTTCGAGGGTTTGAGATCCTGTCTGTGTTTCATCCAACTGATGAGGTTATAAATTCAGTCATTATGGGCAGGAAAAAGACGATATCTGTTGATCGATTTGATGATCAAGGGAATAAATCCATGGTAAGGCCTTGTAAGTGCTCTGAGATGCAGAGCTTCAATATCCCAAAAATGGAGGAATTAGCTATGGAGGAGCAGCTTTCTTAA 945 41.8 MVCQEEPLVRKICELYDQISNLENLKPCKNVDILFTQLVLTCMQPSPIDVAKLCTRVQQIRAKLIQLCAEAEGLLESHFSTILASFKNPLQNLDLFPYYSNYLKLSLLEFNILTDHCQYPPSKLAFIGSGSLPLTSIVLALNHLPSTIFHNYDIDPSAKSKAFSLISTHPDLSKRMFFHTADIMNVTNALKEYQVVFLAALVGMNKEEKAKVIDHLCKYMAPGAYLMVRSAHGARAFLYPVVDFVDLRGFEILSVFHPTDEVINSVIMGRKKTISVDRFDDQGNKSMVRPCKCSEMQSFNIPKMEELAMEEQLS 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5012512 5013456 + BLOR03414 Blo11g00538 66738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00538 314 Gene3D Vaccinia Virus protein VP39 7 272 IPR029063 -
Blo11g00538 314 PANTHER SYNTHASE, PUTATIVE-RELATED 1 313 - -
Blo11g00538 314 PANTHER NICOTIANAMINE SYNTHASE 3 1 313 IPR004298 GO:0030410|GO:0030418
Blo11g00538 314 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Blo11g00538 314 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Blo11g00538 314 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 253 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00538 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - tcc:18600574 436.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00479 Blo-Chr8:11176277 Blo11g00538 Blo-Chr11:5012512 1.50E-86 dispersed
Blo11g00538 Blo-Chr11:5012512 Blo14g00652 Blo-Chr14:13287744 5.93E-94 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00538 . 1 314 Nicotianamine Synthase Gene Family AT1G09240 58.8 3.1e-100 362.1
Blo14g00652 BCT 9 281 Nicotianamine Synthase Gene Family AT1G09240 52.7 1.9e-73 273.1
Blo08g00479 BCT 18 281 Nicotianamine Synthase Gene Family AT1G09240 52.1 3.1e-71 265.8
Blo11g00538 . 3 314 Nicotianamine Synthase Gene Family AT1G56430 57.0 9.6e-97 350.5
Blo14g00652 BCT 22 281 Nicotianamine Synthase Gene Family AT1G56430 53.8 2.3e-74 276.2
Blo08g00479 BCT 11 281 Nicotianamine Synthase Gene Family AT1G56430 51.1 1.9e-73 273.1
Blo11g00538 . 1 311 Nicotianamine Synthase Gene Family AT5G04950 54.6 3.0e-95 345.5
Blo14g00652 BCT 22 281 Nicotianamine Synthase Gene Family AT5G04950 51.9 7.3e-73 271.2
Blo11g00538 . 1 311 Nicotianamine Synthase Gene Family AT5G56080 54.9 2.8e-93 339.0
Blo14g00652 BCT 22 281 Nicotianamine Synthase Gene Family AT5G56080 54.0 5.0e-74 275.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00538 Blo_Chr11 FPKM 5.517731 7.407045 5.153518 6.5091 21.886118 13.956877 15.841259 22.324791 20.97987 20.541595