Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00560 ATGGCTTCTAATCAGTCATTGTGTTCATGGATTGTGTTGGTGAGCTTATTGTTTGTCGTCCGATGCGATGATTGGGATAGCGGACATGCTACGTTCTATGGTGATATCGATGGCAAAGGCACCATGGAGGGAGCTTGTGGCTATGGTGATCTGTTCAAACAAGGTTATGGGCTAGAGACAACGGCACTCAGCACTGCTCTCTTCAACGACGGAAAGACTTGTGGTGCATGCTACGAGGTACAATGCGTAGACTCACAATATTGTAAATCCGGCTCCATCAAAGTCACAGCCACCAATTTGTGCCCACCCTCAGACCATCCATCTGGAAATTGGTGCAATGCCCCGCAAAAGCACTTCGATCTGACTCAGCCGATGTTCTTAAAAATTGCTGAATACAAAGCTGGCATTGTCCCGATTCAATTCCGGAGAATTCCTTGCGTGAAGAGTGGAGGTATCAAATTCGAGATCAATGGAAACCCTAATTTTCTACTCGTTTTGGTTTTCAACGTCGGAGGTGTCGGCGACGTTGTTGACGTGAAAGTCAAGGGATCAAACACCAATTGGTTGCAGATGAATCGTAACTGGGGCGACAAGTGGGACAACAGCACACCATTGGTGGGGCAGAGCTTGTCGTTCCAAGTGACTACCAGCGACGGGAGGTCGGTGGAATGCGACAATGTTGCTCCGGCTAACTGGCAATTCGGGCAGACCTACGAAGGAAGCACCAATTTGTAG 735 48.44 MASNQSLCSWIVLVSLLFVVRCDDWDSGHATFYGDIDGKGTMEGACGYGDLFKQGYGLETTALSTALFNDGKTCGACYEVQCVDSQYCKSGSIKVTATNLCPPSDHPSGNWCNAPQKHFDLTQPMFLKIAEYKAGIVPIQFRRIPCVKSGGIKFEINGNPNFLLVLVFNVGGVGDVVDVKVKGSNTNWLQMNRNWGDKWDNSTPLVGQSLSFQVTTSDGRSVECDNVAPANWQFGQTYEGSTNL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5291861 5293254 - BLOR03436 Blo11g00560 66760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00560 244 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Blo11g00560 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Blo11g00560 244 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Blo11g00560 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Blo11g00560 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Blo11g00560 244 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Blo11g00560 244 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Blo11g00560 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Blo11g00560 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 151 IPR007112 -
Blo11g00560 244 Gene3D - 151 244 IPR036749 -
Blo11g00560 244 Gene3D - 18 146 IPR036908 -
Blo11g00560 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Blo11g00560 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Blo11g00560 244 PANTHER EXPANSIN-A15 20 241 IPR002963 GO:0009664
Blo11g00560 244 PANTHER EXPANSIN 20 241 - -
Blo11g00560 244 Pfam Lytic transglycolase 60 141 IPR009009 -
Blo11g00560 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Blo11g00560 244 SUPERFAMILY Barwin-like endoglucanases 13 169 IPR036908 -
Blo11g00560 244 SMART dpbb_1 60 141 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00560 Blo-Chr11:5291861 Blo18g00408 Blo-Chr18:4373156 6.65E-111 dispersed
Blo11g00560 Blo-Chr11:5291861 Blo11g00561 Blo-Chr11:5295233 4.86E-166 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00560 - - ming:122084840 315.849