Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00580 ATGTTGACAGATATCTCTGTATATTTCTCTTCAAGAAGCCAACCCTCTTCATTTTCTCAAGAAACGGCTCTACTGCGTTCTCTTCACTGCAGAAAAATGGCTTATTTTGAAATTCTTCTAGCGGCATTCTCTCTTTTAGTTTGTTCTGTTAATGGGTATTATGGGGGTTGGATTAACGCCCATGCAACTTTCTATGGCGGAAGTGATGCATCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTTTACAGCCAAGGCTATGGGACAAACACTGCAGCATTGAGCACTGCGCTGTTCAACAATGGTTTGAGCTGTGGTGCCTGCTATGAATTAAGATGCACAAATGACCCACAATGGTGTCTTCCAGGATCCATTGTGGTCACTGCGACTAATTTCTGCCCTCCAGGAGGGTGGTGTGACCCTCCTCGAGAACATTTTGATCTCTCTCAGCCTATATTTCAACACATTGCTCAGTACAGGGCTGGAATTGTGCCTGTTTCCTACAGAAGGGTAAGATGCAGAAGAGGTGGAGGCATTAGATTCACAATCAATGGCCATTCTTACTTCAATTTAGTGCTGATAACCAACGTGGGGGGAGCTGGAGACGTCCATGCTGTAGCCATTAAAGGGTCAAAAAGTAGGTGGCAGCAAATGTCAAGAAATTGGGGTCAGAACTGGCAGAGCAACTCTTACTTAAATGGACAAAGCCTCTCTTTTGCAGTCACAGCCAGTGATGGTCGAACTGTCGTTTCTTACAACGTAGCTCCTCACGCCTCAAGGTCTTCTCTTCAATGGCTGTCAGAGAAGTTTAGAGGGCTGTGCAGTAGAATTTACTGCATTAAGATCGACCAGATTCTGCTGCCGCCTCCGCCGTCGCTGAGCAAGGGAGAAGGAAGTGCCGCCAAGCCTCTGCAAGAAAAACTTGTCTCCACCGTGAAGATGCACAGTCGAGGAGAGAAGAAATTCGCAGTCTCTCCTCCACAGAAACCGCCGCCCTTCCTTCTGCAAAACCGTCTGGCTACCCTTGCGAACCCAGAGATCGCGGGTCTCCAGTGTCTTCTCGAGCACACAGAAGCCACTGTCATTTTGTCATTTCGATCGGAATCTTTCTTCGCAGGCAGAGGAAGCCTGCCTCTTGCTCTCTCTGATCTGTATCTTCGTCGGATGCAGAAAATGTGTCCCGTGCTTCTCGATCTTCGATAA 1206 47.76 MLTDISVYFSSRSQPSSFSQETALLRSLHCRKMAYFEILLAAFSLLVCSVNGYYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYELRCTNDPQWCLPGSIVVTATNFCPPGGWCDPPREHFDLSQPIFQHIAQYRAGIVPVSYRRVRCRRGGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSKSRWQQMSRNWGQNWQSNSYLNGQSLSFAVTASDGRTVVSYNVAPHASRSSLQWLSEKFRGLCSRIYCIKIDQILLPPPPSLSKGEGSAAKPLQEKLVSTVKMHSRGEKKFAVSPPQKPPPFLLQNRLATLANPEIAGLQCLLEHTEATVILSFRSESFFAGRGSLPLALSDLYLRRMQKMCPVLLDLR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5668430 5670425 + BLOR03456 Blo11g00580 66780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00580 401 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 179 IPR007112 -
Blo11g00580 401 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Blo11g00580 401 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Blo11g00580 401 PRINTS Expansin/Lol pI family signature 162 178 IPR007118 GO:0005576
Blo11g00580 401 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Blo11g00580 401 PRINTS Expansin/Lol pI family signature 56 71 IPR007118 GO:0005576
Blo11g00580 401 Gene3D - 178 264 IPR036749 -
Blo11g00580 401 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 268 IPR007117 -
Blo11g00580 401 Pfam Lytic transglycolase 92 169 IPR009009 -
Blo11g00580 401 PANTHER EXPANSIN-A5 39 260 - -
Blo11g00580 401 SUPERFAMILY PHL pollen allergen 177 258 IPR036749 -
Blo11g00580 401 SMART dpbb_1 92 169 IPR007112 -
Blo11g00580 401 Pfam Expansin C-terminal domain 180 257 IPR007117 -
Blo11g00580 401 SUPERFAMILY Barwin-like endoglucanases 56 197 IPR036908 -
Blo11g00580 401 PANTHER EXPANSIN-A15 39 260 IPR002963 GO:0009664
Blo11g00580 401 Gene3D - 46 175 IPR036908 -
Blo11g00580 401 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 178 190 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 225 246 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 154 167 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 190 211 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 114 125 IPR002963 GO:0009664
Blo11g00580 401 PRINTS Expansin signature 137 154 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo10g00137 Blo11g00580 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00580 Blo-Chr11:5668430 Blo16g01112 Blo-Chr16:39592483 7.77E-133 dispersed
Blo10g00137 Blo-Chr10:1545841 Blo11g00580 Blo-Chr11:5668430 6.92E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00580 - K20628 rcu:8261626 419.468