Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00595 ATGTCCATCTTGCCTCCACGAGCCTACGGTTCTGCGTCTTCGTCGTCTTCCTCCTCTGTTCCCTCTCCAAACCCTCCTTCCCAACATGGCAAACATCCTGTTCTTCTCTCCTCTTCTCCTCCCTCCCCCTCCCCTTCTCCTATTTGTCAGTGTAACCCGCCCTTCCAGTTGCTTCGGATCTCCGATTCTCAGTCTCCCCCCTTAGACTCCTGCGGCGATTCGGGTGCAACCAGTAAAGCTGCAGAAGATTTCTGTGGACCTTCCGAAAAGGTTTTGACCAACTGCATGGATTTCTTCTTACGATCTTCTCTCCAGGTGACACAGCACAAGAAATCAGTCCATCAGAAGACTTTGCCCCATGAAATTGCAATCACTCATACCCAGGATTCCTCAAGTGGAGTGGGGATAAGATCAGCTCATTCTAAAGGAAAAAGGACTGCATCTACTGATTGTCCTTTAGGTCAACAAAACAATGGGTCTGTTAGTTCACTTGGCCATGGGCCCAATTCAACTGTTCGAAAAGCCCAGGTAATGAATGCTAATCATTTGCTGAACTTTCATTATGATGCCATTTCACGTCCTCAACCAAGAGCTCCTCCTCCAAGAAGGCAGAAATTAAAGCCATACAACAAAGCTCTATTTCTTCAGGCTAATTATAAATTTGTGGTATTAGACTCGGGTAATTATTTACCAGAGTCTTTGGATCCAGATAAAATGTTGCATTGGGATGAGATTATATGTGTGAGGTACTCGACACCAACTCTTATTCAGTGTCCTATTTGTTTGGAATATCCCTTGTGTCCTCAAATTACCACATGTGGACATATTTTTTGTTTCCCATGCATTCTACGTCACTTGTTAATGGGAGAAGAGGATCATAAAGGTGACTGTTGGAAAAAGTGTCCCTTGTGTTTTGTTATGATATCTCCAAAAGATTTATATACAGTATACATTGAGATTGTTGAACTGTATTCTGTTGGTGATACTATACCATTCACGCTTTTGAACCGGCAAAAAGATTCATTCGTTTTATCACGTCAGCATGAACAAGAGAACATAGGCATACCGCTTGATGATAGCGATGAAATTTACGACCCCTTTTCGAAGTTCACATTTACATTGGATGTGAATCTCTCAATCAGAAAAGCAAAGTCAGATCTAGAAGGATGGTTGGTCAGAGCAGAAGCAGGTCTTGTTGATGACCTAGAGAAGCTTCCATATGTTTGTGCTGCAGTCGAGCAACTAGATCAGAGGAAAATGCTTTTGAATGAGCATCTGGCTTCTGTGAAGAGTCAGTCCTGTCAAAATATGGACTCTCAGGGAGAAACTCATTCAGTTAAGTCCAATGCTGATGTTGATACCTCTGGTTGTGCAACATCCGGTTTTGGAGATGCATTTTTGGCTTCTGAATCCAATGAACAAAGCAAGAGGTATAGTAATGCGATCACTTTGAATGGTACTTGTTTGGAGCAAACGATGGATGTGGGTGAATCATTAGAAGGTCAAGAAGTTGTTTTATCTTCTTCATACGAGGAAGATAGTATCGTTCAAGGGACCTCAAATCAATGTAGATCAGTAGAAAAGAAAGAGTCATACAATTTCTACCAGGCGGCTGATGGCCAATACATCATTCTTCATCCACTAAATGTTAAGTGTCTTCTACACCATTATGGAAGCTACACCATGCTTCCAGACAGTTCTATATTCCCTTTTTTTTCCAACCACGACCATGAAATGCAGGATAAGTGGAAGAATCTTACAGTTGGAGACAGTGACACAGTCAGAAGCCACAAGGAGGCGCTATCGTTATCTAAGTCATTTTTCTTTGACAACTACCTTCCAGGCATGCTTTGCGAAGTTGATTTGAGTGAATTATTGCCTCCTGCCTCTCTCATGCCGTTTATGGACGAAATAAAGAAGCGTGAAAAGCAGAGGAAACAACTTGCTAAGAAGGAATACAAGGAGAAGATCAAGGCAGAAACTGCAGCAACTTATTCTATGATTGATTTACATAACTTTGGGCATGTCATTCACGATGATGCCCCATCTTTCTCTATGGATGATTTTGAAGCTTTGGGAAGTTCTGGGGGTACATCATCCAGCCCTCCAATTGTGGCGGATAGGAAACTCTTTTCAAATGTTACTAAGCTTGGGTTTGCAGCGGGGCACGATAGTCCGCAGTTGACGATGGATGAAACAAAGCCTCCGAGTAATCAACCGAACACTGGCTCATTGAGTGGAACAGGGACGAGGAATGAATCGTTTGCCAATGTGACATCGAGAGCCCCGGACGCACCACCCAAGAATGGGGAAATGGGGAAACGGGGGAAGAAACCGAGTAGAGTTCTCCTATCAACGTCGGGGGGTCGGAGATACTGA 2379 43.3 MSILPPRAYGSASSSSSSSVPSPNPPSQHGKHPVLLSSSPPSPSPSPICQCNPPFQLLRISDSQSPPLDSCGDSGATSKAAEDFCGPSEKVLTNCMDFFLRSSLQVTQHKKSVHQKTLPHEIAITHTQDSSSGVGIRSAHSKGKRTASTDCPLGQQNNGSVSSLGHGPNSTVRKAQVMNANHLLNFHYDAISRPQPRAPPPRRQKLKPYNKALFLQANYKFVVLDSGNYLPESLDPDKMLHWDEIICVRYSTPTLIQCPICLEYPLCPQITTCGHIFCFPCILRHLLMGEEDHKGDCWKKCPLCFVMISPKDLYTVYIEIVELYSVGDTIPFTLLNRQKDSFVLSRQHEQENIGIPLDDSDEIYDPFSKFTFTLDVNLSIRKAKSDLEGWLVRAEAGLVDDLEKLPYVCAAVEQLDQRKMLLNEHLASVKSQSCQNMDSQGETHSVKSNADVDTSGCATSGFGDAFLASESNEQSKRYSNAITLNGTCLEQTMDVGESLEGQEVVLSSSYEEDSIVQGTSNQCRSVEKKESYNFYQAADGQYIILHPLNVKCLLHHYGSYTMLPDSSIFPFFSNHDHEMQDKWKNLTVGDSDTVRSHKEALSLSKSFFFDNYLPGMLCEVDLSELLPPASLMPFMDEIKKREKQRKQLAKKEYKEKIKAETAATYSMIDLHNFGHVIHDDAPSFSMDDFEALGSSGGTSSSPPIVADRKLFSNVTKLGFAAGHDSPQLTMDETKPPSNQPNTGSLSGTGTRNESFANVTSRAPDAPPKNGEMGKRGKKPSRVLLSTSGGRRY 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5879571 5885006 + BLOR03471 Blo11g00595 66795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00595 792 Pfam Zinc finger, C3HC4 type (RING finger) 258 304 IPR018957 GO:0046872
Blo11g00595 792 MobiDBLite consensus disorder prediction 7 37 - -
Blo11g00595 792 PANTHER RING FINGER 10 FAMILY MEMBER 130 572 IPR039739 -
Blo11g00595 792 PANTHER RING FINGER 10 FAMILY MEMBER 617 789 IPR039739 -
Blo11g00595 792 MobiDBLite consensus disorder prediction 1 48 - -
Blo11g00595 792 ProSitePatterns Zinc finger RING-type signature. 273 282 IPR017907 -
Blo11g00595 792 ProSiteProfiles Zinc finger RING-type profile. 258 304 IPR001841 -
Blo11g00595 792 MobiDBLite consensus disorder prediction 148 170 - -
Blo11g00595 792 SMART ring_2 258 304 IPR001841 -
Blo11g00595 792 MobiDBLite consensus disorder prediction 730 759 - -
Blo11g00595 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 319 IPR013083 -
Blo11g00595 792 MobiDBLite consensus disorder prediction 125 170 - -
Blo11g00595 792 SUPERFAMILY RING/U-box 257 311 - -
Blo11g00595 792 Coils Coil 639 659 - -
Blo11g00595 792 CDD RING-HC_RNF10 258 305 - -
Blo11g00595 792 MobiDBLite consensus disorder prediction 722 792 - -
Blo11g00595 792 Coils Coil 412 432 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00595 - - - pxb:103966589 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00595 Blo-Chr11:5879571 Blo07g00946 Blo-Chr7:28752950 4.23E-06 dispersed
Blo11g00595 Blo-Chr11:5879571 Blo02g00076 Blo-Chr2:513655 2.52E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1095 . Blo11g00595 . . . . . . . Cmo11g01570 Cma11g01553 . Car11g01267 . . . . . . . . . . . . . . . . . . . . Cone2ag0010 Cone16ag1030 Lsi05g00445 . . . . . Bda07g01364 . . Bpe11g01467 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g02570 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00514 . 78 545 C3H Transcription Factor Family AT2G31510 77.7 1.7e-230 795.4
Blo01g00201 . 211 697 C3H Transcription Factor Family AT2G31510 75.5 1.1e-226 782.7
Blo18g00504 . 55 495 C3H Transcription Factor Family AT2G31510 76.4 6.9e-208 720.3
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31770 59.2 2.7e-168 589.0
Blo17g00514 . 47 521 C3H Transcription Factor Family AT2G31770 57.5 1.0e-167 587.0
Blo18g00504 . 25 452 C3H Transcription Factor Family AT2G31770 54.9 6.6e-143 504.6
Blo17g00514 . 61 543 C3H Transcription Factor Family AT2G31760 56.2 8.1e-167 583.9
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31760 58.9 2.4e-166 582.4
Blo18g00504 . 68 452 C3H Transcription Factor Family AT2G31760 59.3 2.2e-143 506.1
Blo02g00244 . 1 193 C3H Transcription Factor Family AT3G03550 52.6 2.6e-55 213.0
Blo11g00325 . 80 273 C3H Transcription Factor Family AT3G02290 51.7 2.4e-49 192.6
Blo18g00416 . 4 172 C3H Transcription Factor Family AT3G02290 57.5 4.5e-48 188.3
Blo14g00463 . 1 304 C3H Transcription Factor Family AT1G11020 76.9 5.5e-137 484.2
Blo07g00818 . 53 212 C3H Transcription Factor Family AT1G50440 75.0 4.8e-66 248.1
Blo06g00177 . 621 879 C3H Transcription Factor Family AT5G08750 59.3 8.8e-83 304.3
Blo09g00173 . 1 418 C3H Transcription Factor Family AT3G16090 73.0 4.9e-161 564.7
Blo12g01130 . 47 201 C3H Transcription Factor Family AT1G22510 74.8 2.2e-62 235.7
Blo18g00416 . 1 171 C3H Transcription Factor Family AT5G38895 53.1 9.7e-44 174.5
Blo06g00237 . 57 267 C3H Transcription Factor Family AT1G19310 60.9 6.3e-71 264.2
Blo12g00913 CCT,ECH 1232 1422 C3H Transcription Factor Family AT1G19310 66.8 4.5e-69 258.1
Blo04g01010 . 16 222 C3H Transcription Factor Family AT1G19310 59.4 1.1e-67 253.4
Blo12g01130 . 51 201 C3H Transcription Factor Family AT1G72175 72.8 4.1e-58 221.1
Blo05g00780 . 1 322 C3H Transcription Factor Family AT2G22120 83.3 4.7e-161 564.3
Blo06g01191 . 1 390 C3H Transcription Factor Family AT1G18470 74.1 4.1e-172 601.3
Blo15g00366 . 30 415 C3H Transcription Factor Family AT1G18470 72.8 6.7e-167 583.9
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31770 59.2 2.7e-168 589.0
Blo17g00514 . 47 521 C3H Transcription Factor Family AT2G31770 57.5 1.0e-167 587.0
Blo18g00504 . 25 452 C3H Transcription Factor Family AT2G31770 54.9 6.6e-143 504.6
Blo17g00514 . 61 543 C3H Transcription Factor Family AT2G31760 56.2 8.1e-167 583.9
Blo01g00201 . 194 655 C3H Transcription Factor Family AT2G31760 58.9 2.4e-166 582.4
Blo18g00504 . 68 452 C3H Transcription Factor Family AT2G31760 59.3 2.2e-143 506.1
Blo03g00497 . 14 239 C3H Transcription Factor Family AT5G55970 68.5 3.0e-95 345.5
Blo06g00177 . 621 885 C3H Transcription Factor Family AT5G63780 55.5 4.7e-76 282.0
Blo03g00497 . 16 309 C3H Transcription Factor Family AT4G26580 65.8 6.2e-115 411.0
Blo05g00205 . 1 247 C3H Transcription Factor Family AT3G63530 50.8 9.3e-68 253.8
Blo11g00717 . 96 499 C3H Transcription Factor Family AT5G01960 63.5 7.5e-126 447.6
Blo01g01023 . 1 293 C3H Transcription Factor Family AT5G01960 53.4 5.7e-65 245.4
Blo01g01024 . 40 157 C3H Transcription Factor Family AT5G01960 86.4 2.2e-56 216.9
Blo15g00434 CCT 1 151 C3H Transcription Factor Family AT2G04240 52.8 1.3e-38 156.4
Blo02g01173 . 392 751 C3H Transcription Factor Family AT5G45290 55.5 8.0e-96 348.2
Blo03g00266 . 8 164 C3H Transcription Factor Family AT5G45290 67.3 2.7e-51 200.3
Blo07g01162 BCT 68 232 C3H Transcription Factor Family AT5G05830 64.1 2.6e-55 212.2
Blo09g00251 BCT 60 219 C3H Transcription Factor Family AT5G05830 58.0 2.9e-51 198.7
Blo18g00416 . 3 171 C3H Transcription Factor Family AT5G15790 57.5 1.4e-49 193.4
Blo11g00325 . 92 273 C3H Transcription Factor Family AT5G15790 55.3 4.5e-48 188.3
Blo04g00116 BCT 1 255 C3H Transcription Factor Family AT3G55530 78.1 2.3e-104 375.6
Blo13g00883 BCT 326 530 C3H Transcription Factor Family AT3G55530 78.5 1.6e-81 299.7
Blo06g00466 . 1 274 C3H Transcription Factor Family AT1G63900 74.9 7.4e-114 407.1
Blo02g00262 . 12 397 C3H Transcription Factor Family AT2G44580 56.3 3.4e-125 445.3
Blo06g00237 . 65 192 C3H Transcription Factor Family AT1G74990 57.6 1.3e-39 159.5
Blo12g00913 CCT,ECH 1234 1352 C3H Transcription Factor Family AT1G74990 60.0 1.6e-37 152.5
Blo18g00251 . 80 395 C3H Transcription Factor Family AT5G20910 61.7 2.6e-107 385.6
Blo09g00173 . 119 419 C3H Transcription Factor Family AT1G65040 66.3 1.4e-100 363.2
Blo04g01010 . 19 223 C3H Transcription Factor Family AT2G23780 64.4 1.2e-74 276.6
Blo06g00237 . 61 268 C3H Transcription Factor Family AT2G23780 61.6 2.0e-72 269.2
Blo12g00913 CCT,ECH 1235 1432 C3H Transcription Factor Family AT2G23780 55.8 1.6e-58 223.0
Blo11g00108 . 61 374 C3H Transcription Factor Family AT3G10810 55.6 5.4e-83 305.4
Blo09g00355 . 1 313 C3H Transcription Factor Family AT3G10810 54.1 1.9e-80 297.0
Blo07g01208 . 1 314 C3H Transcription Factor Family AT3G10810 54.1 3.3e-80 296.2
Blo02g01115 . 1 161 C3H Transcription Factor Family AT1G63840 50.3 1.4e-38 156.4
Blo06g01030 . 4 359 C3H Transcription Factor Family AT1G68070 66.7 3.4e-129 458.4
Blo03g00199 . 53 370 C3H Transcription Factor Family AT1G68070 50.8 3.4e-84 308.9
Blo12g00847 . 5 183 C3H Transcription Factor Family AT1G76410 53.6 4.2e-49 191.4
Blo18g00046 . 1 397 C3H Transcription Factor Family AT1G80400 54.5 1.7e-114 409.8
Blo06g00675 . 55 380 C3H Transcription Factor Family AT1G80400 59.5 8.0e-109 391.0
Blo17g00036 . 1 348 C3H Transcription Factor Family AT1G80400 51.4 5.4e-89 325.1
Blo15g00751 BCT 85 223 C3H Transcription Factor Family AT2G15530 66.4 3.7e-53 206.8
Blo17g00514 . 78 545 C3H Transcription Factor Family AT2G31510 77.7 1.7e-230 795.4
Blo01g00201 . 211 697 C3H Transcription Factor Family AT2G31510 75.5 1.1e-226 782.7
Blo18g00504 . 55 495 C3H Transcription Factor Family AT2G31510 76.4 6.9e-208 720.3
Blo01g01251 . 5 171 C3H Transcription Factor Family AT2G35910 56.8 1.1e-48 190.3
Blo07g01280 . 12 333 C3H Transcription Factor Family AT2G41980 72.8 2.5e-139 491.9
Blo07g00335 CCT,ECH 57 314 C3H Transcription Factor Family AT2G41980 80.2 2.0e-128 455.7
Blo15g00087 CCT,ECH 285 542 C3H Transcription Factor Family AT2G41980 79.8 2.2e-127 452.2
Blo02g00324 BCT 571 844 C3H Transcription Factor Family AT2G41980 75.5 3.5e-125 444.9
Blo16g00472 BCT 29 302 C3H Transcription Factor Family AT2G41980 74.4 2.3e-124 442.2
Blo13g00641 . 249 504 C3H Transcription Factor Family AT2G41980 78.1 1.1e-123 439.9
Blo04g00397 . 1238 1498 C3H Transcription Factor Family AT2G41980 75.5 5.8e-120 427.6
Blo02g00628 . 115 382 C3H Transcription Factor Family AT3G06140 60.2 8.1e-89 324.3
Blo07g01402 BCT 33 321 C3H Transcription Factor Family AT3G09770 61.5 5.9e-89 324.7
Blo09g00546 BCT 30 311 C3H Transcription Factor Family AT3G09770 58.8 2.2e-83 306.2
Blo11g00595 . 169 733 C3H Transcription Factor Family AT3G26730 52.1 3.7e-149 525.8
Blo13g00055 . 391 698 C3H Transcription Factor Family AT3G47990 70.8 1.0e-129 459.9
Blo02g00244 . 6 186 C3H Transcription Factor Family AT5G17600 53.8 1.2e-50 197.6
Blo12g00847 . 5 184 C3H Transcription Factor Family AT1G20823 55.6 8.2e-51 197.2
Blo04g00872 . 15 235 C3H Transcription Factor Family AT5G66070 69.7 2.4e-75 278.9
Blo05g00700 . 50 256 C3H Transcription Factor Family AT5G66070 76.9 1.7e-73 272.7
Blo06g01191 . 5 426 C3H Transcription Factor Family AT1G73950 67.5 2.2e-160 562.4
Blo15g00366 . 34 452 C3H Transcription Factor Family AT1G73950 66.1 2.2e-157 552.4
Blo06g01030 . 7 253 C3H Transcription Factor Family AT2G01735 61.7 5.2e-82 301.2
Blo03g00199 . 53 265 C3H Transcription Factor Family AT2G01735 50.9 9.9e-49 190.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008995 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00595 Blo_Chr11 FPKM 89.920685 102.811501 25.273428 24.50942 3.234754 2.227418 3.668629 0.0 0.0 0.0