Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00611 ATGGGTGAAAATAAGCCAACTGAAATTAAAGATTTTCAGATTACAGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAAAGAAGCTCAAGTAAAGACAGGCACACCAAGGTGGATGGTCGAGGAAGAAGGATACGGATGCCAGCTCTAAGCGCAGCAAGAATTTTCCAATTGACAAGAGAATTAGGTCATAAATCAGATGGGGAAACCATCCAGTGGCTCTTGCAACAGGCGGAACCTTCGATAATTGCGGCCACCGGAACCGGAACTATTCCGGCTTCCGCTTTAGCCGCCAACGGAGCATCTTTTTCACAGCAAGGGACCTCTTTATCAACCGGATTGCACCAAAAAACTGAGGACGATTTTGGGGGGTCAGGAAGTATGACCAGTTGGGCTATGATGGGTGGCAATTTGGGGAGACCACCGTCCCATATGGGTTCAGGGCTATGGCCTCCGATCGGTGGCTTTGGGCCTCAGTCATCGTCTTCTCCGAACACAAATTTGACGCCAGAGAGTGGAAATTATCTACAGAAGATCGTTCCCGGGCATGACTTGCCAGTCGGAAATATGGGTCCGATGACTTTCACCTCTATTCTGAGTGGCAATAGCCAGCAGCTGCCGGAACTGGGACTCGGGCTTTGGCCAGAAGGTCACATCGGGGTTTTGAACCCACAGGCTTTGAACCAGTTTTATCAGCAGATGAGGCAGGCTAGAGTTCAAACGCACCATCACCAGGCTTCTCCTAAGGATGACTCTCAAGGTTCAGACTCAGCCAACTAG 786 49.36 MGENKPTEIKDFQITVADKEEGKKQLAPKRSSSKDRHTKVDGRGRRIRMPALSAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAANGASFSQQGTSLSTGLHQKTEDDFGGSGSMTSWAMMGGNLGRPPSHMGSGLWPPIGGFGPQSSSSPNTNLTPESGNYLQKIVPGHDLPVGNMGPMTFTSILSGNSQQLPELGLGLWPEGHIGVLNPQALNQFYQQMRQARVQTHHHQASPKDDSQGSDSAN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6109106 6109891 - BLOR03487 Blo11g00611 66811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00611 261 MobiDBLite consensus disorder prediction 238 261 - -
Blo11g00611 261 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Blo11g00611 261 MobiDBLite consensus disorder prediction 1 44 - -
Blo11g00611 261 Pfam TCP family transcription factor 32 119 IPR017887 -
Blo11g00611 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 257 IPR005333 GO:0003700
Blo11g00611 261 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 3 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00611 - - - jre:108987051 375.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00768 Blo-Chr4:7327486 Blo11g00611 Blo-Chr11:6109106 3.94E-39 dispersed
Blo11g00611 Blo-Chr11:6109106 Blo17g00570 Blo-Chr17:10478760 7.40E-105 dispersed
Blo12g00477 Blo-Chr12:22409012 Blo11g00611 Blo-Chr11:6109106 1.62E-33 transposed
Blo10g00401 Blo-Chr10:6870883 Blo11g00611 Blo-Chr11:6109106 3.36E-158 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo04g00426 . 35 259 TCP Transcription Factor Family AT5G23280 51.7 2.3e-50 196.1
Blo04g00768 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 81.7 5.6e-40 162.5
Blo10g00401 . 1 284 TCP Transcription Factor Family AT3G27010 53.0 5.0e-66 248.4
Blo11g00611 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 3.8e-58 222.2
Blo17g00570 . 1 272 TCP Transcription Factor Family AT3G27010 50.2 1.1e-57 220.7
Blo04g00426 . 8 259 TCP Transcription Factor Family AT5G08330 51.8 4.9e-58 221.5
Blo06g01211 . 26 126 TCP Transcription Factor Family AT5G60970 76.5 1.3e-38 157.5
Blo13g00343 . 8 191 TCP Transcription Factor Family AT2G31070 53.8 8.3e-41 164.9
Blo13g00346 . 8 191 TCP Transcription Factor Family AT2G31070 53.3 1.1e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12930 PF03634 TCP 1.50E-30 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00611 Blo_Chr11 FPKM 15.01719 16.123701 23.744669 23.615089 20.689701 21.71365 21.526463 26.868444 25.350859 25.555944