Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00641 ATGTACTTGTCGGAGAAGCCCCGTCCGATTGATTTCTACAAAGAGGGAGAACCGGAGAGAGACATGATGATCGAGGTGGTGACGAATGAGAGTCTGCCGCCTCACCATCATCATCACCACCAGCACACCATGATTCTCGGAGATAGCAGTGGGGGTGAGGAGCCGGAAGTGAAAGCGCCGAAGAAACGGGCCGAGACTTGGGTTCAGGAAGAGACTCGGAGTCTGATAAACTTTCGACGGGAAGTCGATGGACTTTTCAACACTTCAAAGTCCAACAAGCACCTATGGGAGCAGATCTCGGCAAAAATGAGAGATAAGGGTTTCGATCGCTCGCCGACTATGTGTACAGATAAGTGGAGGAACTTGCTAAAAGAGTTCAAGAAAGCGAGACACCAGGCTAAAGATGGCAGCAAATCGGCAAAAATGTCGTATTACGAGGAGCTGGAGGAGCTGCTTAGAGATAGGACCAAAAATGCTGGGGCATATAAGAGCCCCACTCCCCATAAGGTCGAATGTTACATTCAATTTGCTGATAAGGGTCTTGAAGATGCCAATATACCATTTGTATCAATGGAAGCTAGTGACAGGTCAGCTGTCAACTTGGAAAGGCAGTTGGATCCTGATGGCGACCATCTTGCAATTACTGCTGCTGATGCAGTTGGAGTCAATGGAGGGCCTCCTTGGAACTGGAGGGAGACCCCTGGAAATGCAAGAGGGGATGGACATTCTTCTTATTGCGGACGCATTATATCAGTCAAGTTGGGAGACTATACTAGAAGAATTGGGATTGACGGAACATCAGATGCGATTAAAGATGCCATTAAGTCTGCATTCAGGTTGAGGACTAGACGGGCATTTTGGTTGGAAGATGAAGATCATGTCATTCGGAGTCTCGATAGGGACATGCCTTTGGGAAATTACACTCTTCACCTTGACGAAGGAATCAACTTAAAACTATGTCTATACAATGAAAACGATCGAGTGGCTGTTCGGACGGAAGAGATTACACTATACACTGAGGATGATTTCCGCGATTTTCTCACCCGACGAAGCTTGTCCGGTTTAAGAGCGCTTAGCAATTACAGATGCATCGATACTCTTGATGATCTCCATTCAGATGGAATGTATGAGGGGGAAAACATTGCGATTTTCATGGTGTCTCACAAGAAGACACTGCTATTTTGCGGTGTCTACGAGCTTCAAAACACCCTGCGGGGCGTTCTGAAAGTTCGAAGAATTCAGAACTCTCTGGAGGCCTACATCATGGGATTAGAAAGTGTCTTGCTTGGTTTTGCTTTGGCTGTAAATGGATTCTGTTATGTTGTTAAGTTGGTGATGGCTGAGCTCTCTGGAGGAAATTCTCTCGGGTGTTTATTTTTCCTGCTAGTGACAGAGCCTCCGGGCATGGGTTCAAATTTGGCTGTGTCTTCTCCGAGGGACAATCTAAAGGAAATTGAGATAGTGAGTTGGGTGCTCTCTGGATCGGGTGTTGGAGCTGTTGGAGTCGGAGAGTTGTCCCTGTTGGTGTGTCTTCATAAATGGTACTCGCAGGAGAAGATAGCATATAGATTCGACACAGTTGATGAAGGATTTGCACGCGCGAGCTTGCGGTTGGCCAGACTATGTAAAGCCACTCCGACCTATAATGTCCATTCGGGAAGCCGAGTTGCCCAGATCACTTTGACCCATAATGTCCATAACTGTGCAATCAATGCACCTAGTCCGACATCAATCGGCAACCCAATAATCATGCACATCAATGCACTCGGTCTCGACATCAATCGGCGACCCAATAACCGTGCACCTCAATGCACAAGTGGAGTCATGGGCAAGATTAAGATCGGAATCAATGGATTCGGAAGAATTGGCCGCTTGGTTGCTAGGGTGGCCTTGCAGAGCGACGATGTTGAACTCGTCGCTGTTAATGATCCATTTATCACCACTGACTATATGACCTACATGTTTAAGTATGACAGTGTTCATGGCCTCTGGAAGCACCATGAACTTACGGTTCAGGACTCTAAAACACTTCTGTTTGGTGAAAAACCAGTCACTGTTTTTGGATTCAGGAATCCGGAGGAGATCCCATGGGGAGAGACTGGAGCTGATTTTGTTGTTGAGTCGACAGGTGTTTTCACAGATAAGGACAAGGCTGCTACTCACTTGAAGGGTGGCGCTAAGAAGGTTATCATCTCTGCCCCAAGCAAGGATGCACCCATGTTTGTTGTGGGAGTCAATGAGAAAGAATACAAACCAGAGCTTGATGTTGTTTCCAATGCCAGTTGCACCACCAACTGTCTAGCCCCGTTGGCAAAAGTTATAAATGACAGATTTGGCATTGTTGAGGGTCTGATGACGACTGTCCACTCCATCACTGCCACACAGAAGACGGTTGACGGTCCATCTATGAAAGACTGGAGAGGTGGTAGAGCTGCTTCCTTCAACATCATTCCCAGCAGCACTGGAGCTGCTAAGGCTGTTGGTAAAGTTCTGCCAGAACTGAACGGGAAGTTGACTGGAATGGCTTTCCGGGTCCCAACTGTTGATGTTTCGGTTGTTGATCTTACCGTCAGACTAGAAAATAAAGCTAGTTATGAGGACATCAAAGCTGCAATCAAGGAGGAATCCGAGGGCAGCTTGAAGGGAATTCTCGGCTACACTGAAGACGATGTTGTGTCGACTGACTTTCTGGGTGACAGCAGATCAAGCATTTTCGACGCGAAGGCGGGCATTGCGTTGAGCGATAACTTTGTGAAGCTTGTTTCTTGGTACGACAATGAATGGGGATACAGTTCTCGGGTGATAGACTTGATCCGGCACATAAACTCTACCCTGTGA 2838 47.15 MYLSEKPRPIDFYKEGEPERDMMIEVVTNESLPPHHHHHHQHTMILGDSSGGEEPEVKAPKKRAETWVQEETRSLINFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKARHQAKDGSKSAKMSYYEELEELLRDRTKNAGAYKSPTPHKVECYIQFADKGLEDANIPFVSMEASDRSAVNLERQLDPDGDHLAITAADAVGVNGGPPWNWRETPGNARGDGHSSYCGRIISVKLGDYTRRIGIDGTSDAIKDAIKSAFRLRTRRAFWLEDEDHVIRSLDRDMPLGNYTLHLDEGINLKLCLYNENDRVAVRTEEITLYTEDDFRDFLTRRSLSGLRALSNYRCIDTLDDLHSDGMYEGENIAIFMVSHKKTLLFCGVYELQNTLRGVLKVRRIQNSLEAYIMGLESVLLGFALAVNGFCYVVKLVMAELSGGNSLGCLFFLLVTEPPGMGSNLAVSSPRDNLKEIEIVSWVLSGSGVGAVGVGELSLLVCLHKWYSQEKIAYRFDTVDEGFARASLRLARLCKATPTYNVHSGSRVAQITLTHNVHNCAINAPSPTSIGNPIIMHINALGLDINRRPNNRAPQCTSGVMGKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMTYMFKYDSVHGLWKHHELTVQDSKTLLFGEKPVTVFGFRNPEEIPWGETGADFVVESTGVFTDKDKAATHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELDVVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTVDVSVVDLTVRLENKASYEDIKAAIKEESEGSLKGILGYTEDDVVSTDFLGDSRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIRHINSTL 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6636088 6662559 + BLOR03517 Blo11g00641 66841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00641 945 SMART gp_dh_n_7 612 762 IPR020828 GO:0051287
Blo11g00641 945 SMART sant 63 125 IPR001005 -
Blo11g00641 945 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 760 767 IPR020830 GO:0016620
Blo11g00641 945 MobiDBLite consensus disorder prediction 32 65 - -
Blo11g00641 945 Gene3D - 67 129 - -
Blo11g00641 945 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 593 942 - -
Blo11g00641 945 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 613 936 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Blo11g00641 945 CDD GT1 65 130 - -
Blo11g00641 945 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 593 942 IPR020831 GO:0016620
Blo11g00641 945 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 611 778 IPR036291 -
Blo11g00641 945 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 767 924 IPR020829 GO:0016620
Blo11g00641 945 Gene3D - 612 939 - -
Blo11g00641 945 ProSiteProfiles Myb-like domain profile. 59 123 IPR001005 -
Blo11g00641 945 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 761 924 - -
Blo11g00641 945 Gene3D Dihydrodipicolinate Reductase; domain 2 761 926 - -
Blo11g00641 945 Pfam Myb/SANT-like DNA-binding domain 66 151 IPR044822 -
Blo11g00641 945 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 612 715 IPR020828 GO:0051287
Blo11g00641 945 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 783 799 IPR020831 GO:0016620
Blo11g00641 945 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 840 857 IPR020831 GO:0016620
Blo11g00641 945 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 756 774 IPR020831 GO:0016620
Blo11g00641 945 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 721 734 IPR020831 GO:0016620
Blo11g00641 945 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 880 895 IPR020831 GO:0016620
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01180 Blo-Chr4:21037178 Blo11g00641 Blo-Chr11:6636088 0 dispersed
Blo06g01185 Blo-Chr6:35305963 Blo11g00641 Blo-Chr11:6636088 8.32E-09 dispersed
Blo07g01138 Blo-Chr7:31245467 Blo11g00641 Blo-Chr11:6636088 2.87E-09 dispersed
Blo10g00419 Blo-Chr10:7403840 Blo11g00641 Blo-Chr11:6636088 0 dispersed
Blo11g00641 Blo-Chr11:6636088 Blo13g00601 Blo-Chr13:28426206 1.18E-168 dispersed
Blo11g00641 Blo-Chr11:6636088 Blo04g00463 Blo-Chr4:3846877 5.84E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12935 PF02800 Gp_dh_C 1.50E-70 CL0139 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00641 K00134 - csv:101214545 629.017