Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00727 ATGGCTTCTCCATCTCTTCTTCTACTGCTCTCCTGTTGTCTAGCATGCATTGTTTCGTCCTCGCAGGCGAGTTCTTATATGCCAAACATTACCAAGCCCAACACGGAAGCGATGAACGTAATAGACGCCTGCTGGCGGACCAAAGCCGACTGGGCGGCTAACCGTCGCGCATTGGCAGACTGCGCGGTGGGCTTTGGAAAGGACGCAATCGGAGGAAAGTTTGGCGATATCTATGTTGTCACTGATTCCTCCGACGACCAGGTCAACCCAAAACCAGGAACATTACGCTACGGTGTTATTCAACTGCAGCCATTGTGGATTGTCTTTGCTAAGAGTATGGTTATTGTCCTAAAAAGTGAGCTAATTGTGACTAGTTTTAAGACAATCGATGGAAGAGGTGTGGACGTGGAAATTGGGAATGGGCCATGCATCACTTTGCAATATGTTAGTCATGTGATTATCCATGGAATTAGCATCCACGACTGTAAACCAAGCAAAGCTGGACTTGTTCGGAGCAGCACTGCACACCTTGGATATCGTCAAGTATCGGACGGAGATGGCATTGATGTATTCGGGTGTTCGCATATTTGGATCGACCACTGCTTCCTCGCCCGCTGCACTGACGGCCTCATCGACGTCATACATGCTTCAACTGCAATAACCATCACCAACAACTATTTCACGCAGCATGATAAAGTGATGCTGCTTGGACACAATGATCAGTATCCCTATGATAAAGTGATGAAAGTCACAGTAGCCTTCAACCGCTTTGGTGTTAACCTCGTTCAGAGGATGCCTAGGGTAAGATTTGGCTATGCCCATGTTGCCAACAATAAATATGAGGAGTGGGAGATGTACGCCATTGGTGGCAGCGCTAATCCAACCATATTCAGTGAAGGAAACCACTTCGTAGCATCTAATCAACCTTATTTCAAACAGGTTACAAAGCGAGAGGTGCTGAGTGGGTGGAAGAACTGGAAATGGAGGTCTTCCAAGGATGTATTTATGAATGGTGCTTACTTTGTGCAATCTGGATGGGGAAGCTGTAGTCCACTTTACAGTCAAAATCAATCATTCCCAGTTGCTCCAGGATCATTGGTTCCTGCTTTAACTCTCAGTGCAGGCCCTTTGCTTTGTTCCATTGGTAAACCTTGTTGA 1158 46.63 MASPSLLLLLSCCLACIVSSSQASSYMPNITKPNTEAMNVIDACWRTKADWAANRRALADCAVGFGKDAIGGKFGDIYVVTDSSDDQVNPKPGTLRYGVIQLQPLWIVFAKSMVIVLKSELIVTSFKTIDGRGVDVEIGNGPCITLQYVSHVIIHGISIHDCKPSKAGLVRSSTAHLGYRQVSDGDGIDVFGCSHIWIDHCFLARCTDGLIDVIHASTAITITNNYFTQHDKVMLLGHNDQYPYDKVMKVTVAFNRFGVNLVQRMPRVRFGYAHVANNKYEEWEMYAIGGSANPTIFSEGNHFVASNQPYFKQVTKREVLSGWKNWKWRSSKDVFMNGAYFVQSGWGSCSPLYSQNQSFPVAPGSLVPALTLSAGPLLCSIGKPC 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9288708 9290532 + BLOR03603 Blo11g00727 66927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00727 385 Pfam Pectate lyase 118 303 IPR002022 -
Blo11g00727 385 Gene3D - 38 378 IPR012334 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Blo11g00727 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Blo11g00727 385 PANTHER PECTATE LYASE 19 384 - -
Blo11g00727 385 SUPERFAMILY Pectin lyase-like 38 376 IPR011050 -
Blo11g00727 385 SMART amb_all 112 309 IPR002022 -
Blo11g00727 385 PANTHER PECTATE LYASE 18-RELATED 19 384 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00727 Blo-Chr11:9288708 Blo12g00125 Blo-Chr12:8720829 3.41E-147 dispersed
Blo13g00089 Blo-Chr13:1548769 Blo11g00727 Blo-Chr11:9288708 5.48E-102 dispersed
Blo01g01002 Blo-Chr1:29378370 Blo11g00727 Blo-Chr11:9288708 0 wgd
Blo11g00727 Blo-Chr11:9288708 Blo16g00243 Blo-Chr16:5643367 7.78E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00727 K01728 - zju:107419217 586.26