Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00737 ATGGTGATTCCTCGATCCTCCACTGTCTCAGTGAAACTAGCTCGAATACTGCTCCTTCCCTTCATTTCCCCATCATCTCCCTCACTATTTCTCCCTCAATCTGCAACAATTCGCTTTCTCTCTGCTGATTCTTTAGGAATTATTGACGATCTAAACTTTAAGCCTGGTTCGAGTCGATCTTCGGCTGCCTCTTCGATTAATCACTGTTACAGCTTCTCCAGTTTGATTAATGGCGGTGGGGAGCAAACTCAGGACGCTACTGCTGAAGCGGTTGGTGGAAATCCAGCTGAGATGAGCGGAAAAATCGCTCAAGACGCTAGAGAAGTTTGTAAATTGCTTTCTGAAAATCCTAATTCTCCAATTAACTCCTTGCTTGATAGGGCGTCAGTGGAGTTTTCTCCGGCATTGGCTTTGGATGTGCTCCAGAAGCTGAGCAACGCCGGTCTTCTCGCGCTCGCATTCTTCCGATGGGCAGAGAAGCAGAAAGGGGTTAATTACAGCACGGAAAGCTACAACGCTTTAATCGAAGCTCTCGGAAAGATTAAACAGTTCAAATTGATTTGGAATTTGGTGAGGGAGATGAAAGGTAAGGGAATTTTGAGCAAAGAAACTTTGCATCTGATTTCTCGCAGATATGCTCGAGCTCGAAAGGTTAGAGAAGCCATTGAAGCAGTGGAGAGAATGGGAAAATTTAGAATGACATTAGAAGTTTCAGATTTCAATAGACTGATTGATACACTGAGCAAATCAAGAAACGTTGAGAGCGCCCACCAGGTGTTCGATGAAATGAAAACCAGAAAATTCAAACCGGATATCAAATCGTACTCGATTCTACTGGAAGGATGGAGTCAAGAGAAAAATTTGTTGAAATTGAACGAGGTATATAGAGAGATGACAGATGAAGGGTTCGATCCGGATGTCATAACGTACGGTATAGTGATCAACGCACATTGTAAGGTGAAAAAATACGACGAAGCCATTGAATTGTTTCGAGAAATGGAGGCAAAGAACATGAAACCATCTCCTCACATATTCTGCACTTTGATTAACGGGTTGGGCTCGGAGAAGAGGCTAAACGAAGCCCTCGAGTTTTTTGAACTCTCAAAAATTAATGGTTTTGCTCCAGAGGTACCCACGTACAATGCCGTCATCGGAGCTTACTGCTGGTCGACACGATTCGACGATGCGTACAAAATGGTAGACGAGATGAGAAAATACAAAGTCGGTCCGAATTCTCGAACTTTTAATATAATCTTGCATCATCTGATAAAGGGTTGGAGAACGAAAGAAGCATATTCAGTCTACACGAGCATGAGTAACGATCGAGGGTGTGAGCCGACTGTCAGCACGTATGAAATCATCATGAGGATGTTTTGTAAGGAGGAGAGGGTCGACATCGCGATGAGGGTTTGGGACGACATGAGGAGGAGAGGCGTTCTTCCAATAATGCACATGTTTTCGACTTTGATTAGTAGTTTGTGCCATGAAAATAAGTTGGATGAAGCTTGCAAATACTTTGAAGAAATGCTTGAGATAGGTATAAGGCCACCTGCCCAAATGTTTAGCAATTTGAAACAATCTCTTCTGGATCAAGGGAGAAACGAGACTGCTTTGGATTTGTCGAAGAAAATCGACAAACTTAGAAAAGCCCCATTTATCGGTGTGAAATCAGTGGAAGTAAACAGAAAACAAAGCCGAGTAACAGTGAGCGGATATGTGGAGGCCAACAAGGTCTTAAACAGAGTGAAGAGGACAGGAAAGAGAGCTGAAATCTGGCCCTACGTACCTTACAACTTAGTGGCATACCCTTATGTTGCTCAAGCCTACGACAAGAAAGCTCCGGCCGGTTACGTCAAGAATGTCGTCCAAGCCCTCCCGGCCTCCCCGGAAGACCATCTCGCCAACATGTTCAGCGACGACAACCCTAACGCTTGCTCCATCATGTGA 1947 44.22 MVIPRSSTVSVKLARILLLPFISPSSPSLFLPQSATIRFLSADSLGIIDDLNFKPGSSRSSAASSINHCYSFSSLINGGGEQTQDATAEAVGGNPAEMSGKIAQDAREVCKLLSENPNSPINSLLDRASVEFSPALALDVLQKLSNAGLLALAFFRWAEKQKGVNYSTESYNALIEALGKIKQFKLIWNLVREMKGKGILSKETLHLISRRYARARKVREAIEAVERMGKFRMTLEVSDFNRLIDTLSKSRNVESAHQVFDEMKTRKFKPDIKSYSILLEGWSQEKNLLKLNEVYREMTDEGFDPDVITYGIVINAHCKVKKYDEAIELFREMEAKNMKPSPHIFCTLINGLGSEKRLNEALEFFELSKINGFAPEVPTYNAVIGAYCWSTRFDDAYKMVDEMRKYKVGPNSRTFNIILHHLIKGWRTKEAYSVYTSMSNDRGCEPTVSTYEIIMRMFCKEERVDIAMRVWDDMRRRGVLPIMHMFSTLISSLCHENKLDEACKYFEEMLEIGIRPPAQMFSNLKQSLLDQGRNETALDLSKKIDKLRKAPFIGVKSVEVNRKQSRVTVSGYVEANKVLNRVKRTGKRAEIWPYVPYNLVAYPYVAQAYDKKAPAGYVKNVVQALPASPEDHLANMFSDDNPNACSIM 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9909086 9914021 - BLOR03613 Blo11g00737 66937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00737 648 Pfam PPR repeat 442 475 IPR002885 -
Blo11g00737 648 PANTHER OS01G0505500 PROTEIN 101 551 - -
Blo11g00737 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 101 551 - -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 308 341 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 485 516 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 379 411 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 240 272 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 170 199 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 344 375 IPR002885 -
Blo11g00737 648 TIGRFAM PPR: pentatricopeptide repeat domain 450 481 IPR002885 -
Blo11g00737 648 Pfam PPR repeat 170 199 IPR002885 -
Blo11g00737 648 Pfam PPR repeat 485 514 IPR002885 -
Blo11g00737 648 Gene3D Tetratricopeptide repeat domain 424 545 IPR011990 GO:0005515
Blo11g00737 648 Gene3D Tetratricopeptide repeat domain 104 233 IPR011990 GO:0005515
Blo11g00737 648 Pfam PPR repeat family 240 281 IPR002885 -
Blo11g00737 648 Pfam PPR repeat family 305 352 IPR002885 -
Blo11g00737 648 Pfam PPR repeat family 375 423 IPR002885 -
Blo11g00737 648 Gene3D - 546 592 - -
Blo11g00737 648 SUPERFAMILY HMA, heavy metal-associated domain 554 593 IPR036163 GO:0046872
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Blo11g00737 648 CDD HMA 542 590 IPR006121 GO:0046872
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Blo11g00737 648 Gene3D Tetratricopeptide repeat domain 237 408 IPR011990 GO:0005515
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Blo11g00737 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00737 - - - qsu:112025512 692.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00737 Blo-Chr11:9909086 Blo02g00505 Blo-Chr2:7976523 4.73E-11 dispersed
Blo16g00092 Blo-Chr16:2281027 Blo11g00737 Blo-Chr11:9909086 1.90E-29 dispersed
Blo18g00451 Blo-Chr18:4976510 Blo11g00737 Blo-Chr11:9909086 2.44E-37 dispersed
Blo01g01369 Blo-Chr1:51907153 Blo11g00737 Blo-Chr11:9909086 3.10E-08 transposed
Blo03g01506 Blo-Chr3:41903662 Blo11g00737 Blo-Chr11:9909086 1.28E-46 transposed
Blo03g01555 Blo-Chr3:43261360 Blo11g00737 Blo-Chr11:9909086 2.85E-06 transposed
Blo05g00719 Blo-Chr5:24975496 Blo11g00737 Blo-Chr11:9909086 9.15E-27 transposed
Blo05g00853 Blo-Chr5:30881335 Blo11g00737 Blo-Chr11:9909086 4.72E-114 transposed
Blo10g00206 Blo-Chr10:2612829 Blo11g00737 Blo-Chr11:9909086 2.39E-40 transposed
Blo10g00632 Blo-Chr10:19505671 Blo11g00737 Blo-Chr11:9909086 2.93E-46 transposed
Blo12g00107 Blo-Chr12:7750740 Blo11g00737 Blo-Chr11:9909086 6.07E-53 transposed
Blo11g00737 Blo-Chr11:9909086 Blo16g00207 Blo-Chr16:4651416 1.75E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g405 . . . . . . . . Cmo04g01532 Cmo18g00980 . Cma18g00977 Car04g01520 . . Cpe09g00341 Cpe01g01305 . . . . . . . Cla05g02249 Cam05g2415 Cec05g2432 Cco05g2477 Clacu05g2404 Cmu05g2270 Cre05g2388 Cone13ag0775 Cone19ag0778 Cone6ag0404 . . Csa05g02677 Chy10g01205 Cme10g00193 . Blo11g00737 Bda07g01440 . Bpe11g01612 . . . . . Cmo15g00986 . Cma15g00947 . Car15g00891 Cpe13g00375 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012295 1 4 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00737 Blo_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 1.313622 0.0 0.0 0.0