Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00754 ATGCGGAATTGGGGTTACTATGAACCATCCTGCAAGGGTCATCTCGGCCTTCAGCTCATGTCAACCATAGCAGACCGTGATACCAAGCATTATCTTCATGGGCGTGATCACCACACCATGTTCAGTTCAAATGGAGCCTTTCATCCTCGAAACTCTATAGTTCCTGAAGCACCAGTCCATATGAACTATCCAAGGGATAGTTGGATAAACCATAGGGAAAAATTTCTCATGCTACCTCCCAACCCCAATAATGCATTTCTTCAAGAAACTCCAGGAGCTCATTCTCTGCAGATTCTACAGCCACCAACTAATAATACATCACAGGAAGTAATGGTGGGTAGAGTTGAGGAGCCAGCTGCAAGAAAAGAAGGTGGCCAATTGAGAAAACGCCAAGGTGGCGGGGTTCCTGCTGCCCCAAAAATCCCAAAAGCTAAAAAGGCTAAAAAGCCAAAGGAGAGCTCTCCTATGGTTCAGCATGTTAAAACGCCAAAGAAGAGCATGGAATTGGTGATAAACGGGATTGATATGGACATTTCGGGTATTCCCATTCCAGTCTGCTCTTGTACTGGAACTCCCAAACAATGCTACAGGTGGGGATGTGGTGGGTGGCAATCAGCTTGTTGTACAACAAATGTATCAACATATCCTCTCCCCATGAACACCAAAAGGCGTGGATCGAGGATTGCTGGCCGGAAAATGAGTCAGGGTGCATTTAAGAAGGTTCTGGAGAAATTGGCAGCTGAAGGTTACAACTTTGCTAATGCGATTGATTTGAAGAATTACTGGGCTAGACATGGCACTAACAAATTCGTCACGATCAGGTAG 825 45.45 MRNWGYYEPSCKGHLGLQLMSTIADRDTKHYLHGRDHHTMFSSNGAFHPRNSIVPEAPVHMNYPRDSWINHREKFLMLPPNPNNAFLQETPGAHSLQILQPPTNNTSQEVMVGRVEEPAARKEGGQLRKRQGGGVPAAPKIPKAKKAKKPKESSPMVQHVKTPKKSMELVINGIDMDISGIPIPVCSCTGTPKQCYRWGCGGWQSACCTTNVSTYPLPMNTKRRGSRIAGRKMSQGAFKKVLEKLAAEGYNFANAIDLKNYWARHGTNKFVTIR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10236397 10237221 + BLOR03630 Blo11g00754 66954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00754 274 MobiDBLite consensus disorder prediction 119 162 - -
Blo11g00754 274 SMART GAGA_bind_2 1 274 IPR010409 -
Blo11g00754 274 PANTHER PROTEIN BASIC PENTACYSTEINE1-RELATED 1 274 - -
Blo11g00754 274 PANTHER - 1 274 IPR010409 -
Blo11g00754 274 Pfam GAGA binding protein-like family 1 274 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00754 - - - rcu:8268150 394.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00997 Blo-Chr6:33210283 Blo11g00754 Blo-Chr11:10236397 6.42E-145 dispersed
Blo11g00754 Blo-Chr11:10236397 Blo17g00751 Blo-Chr17:23579358 1.04E-41 dispersed
Blo11g00754 Blo-Chr11:10236397 Blo06g00996 Blo-Chr6:33206745 3.01E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g304 . . . . . . Bma14g01708 . . Cmo18g01034 . Cma18g01024 . Car18g00943 Sed06g1887 Cpe09g00299 . Bhi07g01326 Tan04g0859 Cmetu10g0120 Lac13g0491 . . . Cla05g02302 Cam05g2475 Cec05g2498 Cco05g2540 Clacu05g2470 Cmu05g2332 Cre05g2449 Cone13ag0832 . . . Lsi04g00257 Csa05g02609 Chy10g01144 Cme10g00263 . Blo11g00754 Bda07g01535 . Bpe11g01623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00996 . 1 280 BBR/BPC Transcription factor family AT2G01930 53.0 3.0e-78 288.9
Blo11g00754 . 2 274 BBR/BPC Transcription factor family AT2G01930 55.3 1.8e-75 279.6
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT2G01930 54.5 2.2e-73 272.7
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
Blo06g00997 . 2 271 BBR/BPC Transcription factor family AT1G68120 51.2 2.9e-67 252.3
Blo18g00782 . 616 725 BBR/BPC Transcription factor family AT1G68120 55.5 5.4e-37 151.8
Blo13g00531 . 102 269 BBR/BPC Transcription factor family AT2G21240 67.5 1.3e-63 240.4
Blo17g00751 . 1 336 BBR/BPC Transcription factor family AT2G21240 50.6 1.9e-59 226.5
Blo13g00531 . 1 269 BBR/BPC Transcription factor family AT4G38910 59.9 1.7e-57 219.9
Blo17g00751 . 88 336 BBR/BPC Transcription factor family AT5G42520 56.9 2.0e-74 276.2
Blo18g00782 . 477 725 BBR/BPC Transcription factor family AT5G42520 55.8 1.6e-71 266.5
Blo11g00754 . 154 274 BBR/BPC Transcription factor family AT2G35550 57.9 4.0e-41 165.2
Blo06g00997 . 151 271 BBR/BPC Transcription factor family AT2G35550 57.9 6.8e-41 164.5
Blo06g00996 . 163 280 BBR/BPC Transcription factor family AT2G35550 55.9 6.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12940 PF06217 GAGA_bind 7.20E-105 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00754 Blo_Chr11 FPKM 0.851485 0.742929 12.949648 15.884232 0.748674 0.35382 0.14399 93.405067 84.261604 88.57695