Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00760 ATGGAAGAAGACGATAACGAAGCTGAGAGGACCAAGCAACAGGTATGGAGTTGGGGAGCAGGAACGGACGGTCAACTGGCCACCGGCCGACTCGAAGACAACCACTTTCCTCAATTGATTCACCTTCCCTTCCTCTCCTCTTTTCCCGATCCGATTTCTCTCCTCTCCTGCGGCGGCGCTCACGTTATCGCTTTAACTTCTGGTGGGAGATTGGTGACGTGGGGAAGAGGAAGCTCCGGGCAGTTAGGGCATGGCGATTTGGTTAGCTGTTTAGATCCAAAGCCTGTTATGGCCTTGAATAGCATAGTCATTACTAATGTTTCTGCTGGATGGGGTCATTCTGGATTTGTTTCTGATGATGGCAATCTTTATACTTGTGGGGATGGCTCATTTGGTCAGCTAGGGCATGGTGATTATGGATCGCATTGCTCGCCTGCTAAAGTCTCATTCTTTGCTGATATGTTTGTTGAACAGGTCGCTTGTGGTATGCGCCATTCTCTGGCCTTGTTGAAAGGCTTCGATAATGAAGTTCAATCTGCTGCTGGATGTCAAGGAAGTCAAGTTTATGGGTTTGGAGCTGGGAAACGAGGTCAATTAGGTATTTCCAAGGGAATCAAATCAAGTAATACTCCAATAATTACTTGCGGATTCGAAGATACAGAAATTGCAAGCATATCTGCAAATGGAGACCATAGTGCTGCCCTATCTTCTGATGGGAATTTGTTCACTTGGGGAAGAGGGTTTACAGCCCAATCAGATGCTTACTCGCCAATGGTTTTTTCTTCGTCATTGTCTTTTTCCAAAGTCGCTCTGGGATGGAACCATGCATTAACTTTGACAGGTGATGGAAAAGTTTATATGTTAGGTGGTAACCACCATGGAAATCTAGGTGATTCTGAGAGCATAAGACGCAATGGTAATTCATTTACCTTTTCTGATTCAAGCGATCCCGTTCTAGAGAGAATTCATGGTCTTAATGAGATCAAAGTTTCGGACATTGCAGCGGGGGCTGAGCACTCTGCTCTAATAACAGAGGAAGGTGTCCTAAAATCATGGGGTTGGGGTGAGCATGGCCAACTTGGCTTAGTTAGCGATATTGAGAGAGAGGACAAGGTTGGCGGGAGAAGGAACGGAAGGAGGTGTGAGATGACGCGAGTGTGTGCGACTAGCCCTAGAGACGACCTAGAGACACGGATGTGTGCGGCTAGCCCTAGAGACGCCAGAGGGTCGAATGAAACTGGAGAGAAACTGAGAAAGGCAGCAGATCTGCAGAAAGGAAGAAAGGGCTGGGCGTCGGTCGAGGAACTCAGAACTGGAAGCAGATCTTCAGAGTTCTAG 1338 47.38 MEEDDNEAERTKQQVWSWGAGTDGQLATGRLEDNHFPQLIHLPFLSSFPDPISLLSCGGAHVIALTSGGRLVTWGRGSSGQLGHGDLVSCLDPKPVMALNSIVITNVSAGWGHSGFVSDDGNLYTCGDGSFGQLGHGDYGSHCSPAKVSFFADMFVEQVACGMRHSLALLKGFDNEVQSAAGCQGSQVYGFGAGKRGQLGISKGIKSSNTPIITCGFEDTEIASISANGDHSAALSSDGNLFTWGRGFTAQSDAYSPMVFSSSLSFSKVALGWNHALTLTGDGKVYMLGGNHHGNLGDSESIRRNGNSFTFSDSSDPVLERIHGLNEIKVSDIAAGAEHSALITEEGVLKSWGWGEHGQLGLVSDIEREDKVGGRRNGRRCEMTRVCATSPRDDLETRMCAASPRDARGSNETGEKLRKAADLQKGRKGWASVEELRTGSRSSEF 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10445771 10452375 - BLOR03636 Blo11g00760 66960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00760 445 PANTHER OS01G0777800 PROTEIN 15 364 - -
Blo11g00760 445 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 186 238 IPR000408 -
Blo11g00760 445 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 69 120 IPR000408 -
Blo11g00760 445 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 159 169 IPR000408 -
Blo11g00760 445 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 13 68 IPR000408 -
Blo11g00760 445 PRINTS Chromosome condensation regulator RCC1 signature 52 65 IPR000408 -
Blo11g00760 445 PRINTS Chromosome condensation regulator RCC1 signature 342 363 IPR000408 -
Blo11g00760 445 PRINTS Chromosome condensation regulator RCC1 signature 71 87 IPR000408 -
Blo11g00760 445 PRINTS Chromosome condensation regulator RCC1 signature 272 290 IPR000408 -
Blo11g00760 445 PRINTS Chromosome condensation regulator RCC1 signature 14 30 IPR000408 -
Blo11g00760 445 SUPERFAMILY RCC1/BLIP-II 179 362 IPR009091 -
Blo11g00760 445 Gene3D - 250 393 IPR009091 -
Blo11g00760 445 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 239 282 IPR000408 -
Blo11g00760 445 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 364 - -
Blo11g00760 445 Pfam Regulator of chromosome condensation (RCC1) repeat 69 116 IPR000408 -
Blo11g00760 445 Pfam Regulator of chromosome condensation (RCC1) repeat 120 169 IPR000408 -
Blo11g00760 445 Pfam Regulator of chromosome condensation (RCC1) repeat 14 65 IPR000408 -
Blo11g00760 445 Pfam Regulator of chromosome condensation (RCC1) repeat 330 359 - -
Blo11g00760 445 Pfam Regulator of chromosome condensation (RCC1) repeat 222 246 - -
Blo11g00760 445 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 333 343 IPR000408 -
Blo11g00760 445 Gene3D - 6 249 IPR009091 -
Blo11g00760 445 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 346 IPR000408 -
Blo11g00760 445 MobiDBLite consensus disorder prediction 409 445 - -
Blo11g00760 445 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 121 172 IPR000408 -
Blo11g00760 445 SUPERFAMILY RCC1/BLIP-II 13 171 IPR009091 -
Blo11g00760 445 MobiDBLite consensus disorder prediction 401 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00760 - - - dzi:111287496 453.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00760 Blo-Chr11:10445771 Blo06g00181 Blo-Chr6:7604980 5.53E-16 dispersed
Blo11g00760 Blo-Chr11:10445771 Blo05g00521 Blo-Chr5:9551003 1.97E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00760 Blo_Chr11 FPKM 4.723343 7.005216 0.0 0.277723 0.0 0.716473 0.608191 10.653087 8.371155 8.770542