Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00789 ATGTCGGACGAGGAGCACCACTTTGAGTCGAAAGCCGACGCCGGGGCTTCCAAAACTTATCCGCAGCAGGCCGGCACCATTCGCAAGAACGGTTACATAGTCATCAAGGGCAGACCTTGCAAGGTTGTGGAGGTCTCCACTTCTAAAACTGGTAAGCATGGTCATGCTAAATGTCACTTTGTTGCTATTGACATCTTCACTGCCAAAAAGCTGGAAGATATTGTTCCTTCTTCCCACAATTGTGATGTACCCCATGTTACCAGAACTGATTATCAGTTGATTGATATCTCTGAGGATGGATTTGTTAGTCTGCTGACAGACAATGGTAGCACCAAAGATGACCTGAGGCTTCCAACCGATGACAACCTTCTGACTCAGATTAAAGATGGATTCTCTGAGGGTAAGGATCTGGTCGTGTCTGTTATGTCTGCAATGGGGGAAGAGCAGATTTGTGCACTCAAAGACATTGGCCCCAAGTAG 480 46.88 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDNLLTQIKDGFSEGKDLVVSVMSAMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11920878 11927610 - BLOR03665 Blo11g00789 66989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00789 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo11g00789 159 CDD S1_eIF5A 86 156 - -
Blo11g00789 159 Gene3D - 1 85 IPR014722 -
Blo11g00789 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo11g00789 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo11g00789 159 Gene3D - 86 158 IPR012340 -
Blo11g00789 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Blo11g00789 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Blo11g00789 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Blo11g00789 159 MobiDBLite consensus disorder prediction 1 21 - -
Blo11g00789 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo11g00789 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Blo11g00789 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01418 Blo-Chr1:52859890 Blo11g00789 Blo-Chr11:11920878 8.90E-85 dispersed
Blo11g00789 Blo-Chr11:11920878 Blo12g01052 Blo-Chr12:28322063 7.25E-105 dispersed
Blo11g00789 Blo-Chr11:11920878 Blo16g00178 Blo-Chr16:3985046 4.39E-106 wgd
Blo11g00789 Blo-Chr11:11920878 Blo04g00782 Blo-Chr4:7763372 7.85E-106 wgd
Blo11g00789 Blo-Chr11:11920878 Blo06g00921 Blo-Chr6:32453612 1.64E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00789 K03263 K02180 oeu:111388373 317.775