Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00791 ATGTTCGGGTTTATGAAGTCACCAATAAAAGTATTTAAGCAGAACTCAGTAGATACAGGGATCTCAGCCGGTTCAAGTTCAACAAATCCCTTTGATTTAGATACAGATTCTGATTCCAAACCAACTCTAAAGCCGTCGAGAAGAACTTCTTCTGAATCTTCACTTATAATACCGAATACGAACACCAACCCATTCAATGACGATAATGAGAGAAGAGGGCAATCGTCTAATTTGACGGCAAAAAATGGGTATAAAAATGATTTCCGTGAATCTGGGGGATTTGAGAATCAATCTGTGCAAGAACTCGAGAATTATGCTGTGTATAAAGCTGAGGAGACGACTAAATCAGTGAATAATTGCTTGAAGATTGCAGAGAATATTAGAGAAGATGCTACAAAGACCCTTGACATGCTGCATCATCAGGGTGAGCAAATAGAGAGGACTCATAGGATGGCTGCTGATATGGACAAGGATTTGAGTAAGGGAGAAAAGCTTTTGAATAATCTTGGGGGCATGTTTTCTAAACCATGGAAGCCAAAGAAGACGAGAGAAATTACAGGCCCTTTAATTACGGCAGATAATAATTCAAATGGGACAAGTGAAAATCATAAACAGCAGAGAGAGAAGTTGGGTGTAGCTCCACCGCCTAAGGGAGGAAGATCATCATCAAGAACACCTCCTCCTGAACCATCAGGTGCTTTGCAGAAAGTCGAGGTTGAGAAGGCAAAGCAAGATGATGCACTTTCAGATTTAAGTAATATCTTGGGTGATCTCAAGAACATGGCTGTTGATATGGGAAGTGAGCTTGACAGGCAAAACAAAGCTCTCGACCATCTAGGTGACGATGTGGACGAGCTGAACTCTCGTGTGAAAGGCGCCAATCAACGAACAAGGCGTTTGCTCGGGAAGTGA 912 41.89 MFGFMKSPIKVFKQNSVDTGISAGSSSTNPFDLDTDSDSKPTLKPSRRTSSESSLIIPNTNTNPFNDDNERRGQSSNLTAKNGYKNDFRESGGFENQSVQELENYAVYKAEETTKSVNNCLKIAENIREDATKTLDMLHHQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTREITGPLITADNNSNGTSENHKQQREKLGVAPPPKGGRSSSRTPPPEPSGALQKVEVEKAKQDDALSDLSNILGDLKNMAVDMGSELDRQNKALDHLGDDVDELNSRVKGANQRTRRLLGK 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12037944 12039659 - BLOR03667 Blo11g00791 66991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00791 303 MobiDBLite consensus disorder prediction 188 243 - -
Blo11g00791 303 Coils Coil 269 296 - -
Blo11g00791 303 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 303 - -
Blo11g00791 303 SUPERFAMILY SNARE fusion complex 97 168 - -
Blo11g00791 303 Gene3D - 93 171 - -
Blo11g00791 303 CDD SNARE_SNAP25N_23N_29N_SEC9N 104 168 IPR044766 GO:0005484|GO:0031201
Blo11g00791 303 Gene3D - 235 302 - -
Blo11g00791 303 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 303 - -
Blo11g00791 303 SMART tSNARE_6 233 300 IPR000727 -
Blo11g00791 303 SMART tSNARE_6 102 169 IPR000727 -
Blo11g00791 303 CDD SNARE_Qc 241 299 - -
Blo11g00791 303 MobiDBLite consensus disorder prediction 46 84 - -
Blo11g00791 303 MobiDBLite consensus disorder prediction 19 92 - -
Blo11g00791 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 238 300 IPR000727 -
Blo11g00791 303 MobiDBLite consensus disorder prediction 19 36 - -
Blo11g00791 303 SUPERFAMILY SNARE fusion complex 236 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00791 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101213250 441.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00791 Blo-Chr11:12037944 Blo04g00786 Blo-Chr4:7804806 4.28E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00791 Blo_Chr11 FPKM 4.393653 5.272758 5.956779 5.375542 8.138789 7.490216 8.041645 6.728966 6.024755 7.812307