Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00799 ATGATGTACGTATGTGCAGTATCGATAGCGAATGAGCAGTTGATGGAGGATTTGCAAGCTTGGACCTTGGGGCTGGCTAGGATAAAGATTAAAGAGGAAATGTCTCTTTGGACCTTGTACCATTCAAATGTGGTGTCTGTTTTCGAGCATCGATCACCTAATTCTCGAAGATCTGTTCTATTTTTCAGGGTTACTATCAACATGAAGCTTGAAAATGAGTCCATTTTCTTCCATTCAACTCTTGGCCATAAACCTGTATCCAAAGCTTCAGAACTCGTAAATGATGCTTTTGAGTCAGAGAGATTGAAGACGCAAAGTGAGGAAAATCATGACAAATTTTCGCGTGATGTAAATGGTGATAGTGATCTTGATGATGACATGCATTACACGACCGAAGATGAAATTTTTTTGAACCCGTGTAAGAAAGATTTCTCAAGCATTTATCGAATGGATAACAACGATGTTAAAGCTTTCAATGTAGAGTCATTTGAGAAAGATTCAGAAGTTTATGTTGAAAAAAATGTGCCCGAATGTGATTTGCCCGAGTTTGTAGTTTGTTACAAGGGAAATTCTTGCAATATCGTCAAAGACATTTGCATCGACGAGGGAACGATGCCTTCGCCAGATCGAGTCATATTTGAAAGCGATAAGGGCGAGAATGATCAAAATGATGAATGGATGAAGGAGCTGCAGATTACTGATAAAGCTACGGCCAATGAGGTCAAGAATTCAGAGCAAAGTTTGTCTGAGAAGGATTTGGTCGATCAAATAGACGATAATGAGTTGGATCCATCGATTGGTGTCGAGTGTGATTTGGAGGATTTGAATACGAAACAGACCGTGTCTTGTGAGATAGAAAACTTGGCAAATTCTTCCATAGTTTCTGCTTCGAAAAATGAGGCCGATAAATCAACACCAACGGACCTGTATCCTATTTCAATATTGGAAGAACCGAGACATAACAGCATTCCAAATGATTTATCGTACAATAGCAAAGTGGAGAATGAAAGCATTACTTTCAACTTCAGTTCTTTAGAACCTGATTCAAATGGAAAAAGCGAATTACCCAAAAATGGAGCGAATCGTGAGGATAGAAGCAAATCGGAATTTGGAAAGTTATCCAAGGCCGCAGATGGTACGTCCGGCAAAATTCAACTTGGAATTGGAGAATCAAGTTTCTCATCTGTAGGCCCTTTGGCCAGTATGGTAAACTTTTCCGGTCCGGTAGCCTACTCCGGCAGCCTTTCTATTGGATCTGATAGCAGCACTCGATCCTTTGCCTTCCCTATATTGCAAGCTGAATGGCATCATAACAGTCCAGTCAGGATGGCAAAGGCCGATCGGAGATTTCTCCGGAAAAACAGTGGGTGGAGGCAGGGTCTTTTTTGTTGTAGATTCTGA 1401 40.83 MMYVCAVSIANEQLMEDLQAWTLGLARIKIKEEMSLWTLYHSNVVSVFEHRSPNSRRSVLFFRVTINMKLENESIFFHSTLGHKPVSKASELVNDAFESERLKTQSEENHDKFSRDVNGDSDLDDDMHYTTEDEIFLNPCKKDFSSIYRMDNNDVKAFNVESFEKDSEVYVEKNVPECDLPEFVVCYKGNSCNIVKDICIDEGTMPSPDRVIFESDKGENDQNDEWMKELQITDKATANEVKNSEQSLSEKDLVDQIDDNELDPSIGVECDLEDLNTKQTVSCEIENLANSSIVSASKNEADKSTPTDLYPISILEEPRHNSIPNDLSYNSKVENESITFNFSSLEPDSNGKSELPKNGANREDRSKSEFGKLSKAADGTSGKIQLGIGESSFSSVGPLASMVNFSGPVAYSGSLSIGSDSSTRSFAFPILQAEWHHNSPVRMAKADRRFLRKNSGWRQGLFCCRF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12325121 12330737 - BLOR03675 Blo11g00799 66999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00799 466 MobiDBLite consensus disorder prediction 341 376 - -
Blo11g00799 466 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 91 466 - -
Blo11g00799 466 MobiDBLite consensus disorder prediction 341 356 - -
Blo11g00799 466 PANTHER 18S PRE-RIBOSOMAL ASSEMBLY PROTEIN GAR2-LIKE PROTEIN 91 466 IPR040378 GO:0009786
Blo11g00799 466 MobiDBLite consensus disorder prediction 357 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00799 - - - twl:120002096 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00799 Blo-Chr11:12325121 Blo06g00936 Blo-Chr6:32568133 2.74E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g993 . . . . . Bpe10g00909 . . . Cmo18g01111 . Cma18g01086 . Car18g01007 . Cpe09g00236 . . . . . . . . Cla05g02379 Cam05g2550 Cec05g2582 Cco05g2622 Clacu05g2550 Cmu05g2409 Cre05g2526 . . . . Lsi04g00348 . . . . Blo11g00799 Bda07g01494 . Bpe11g01661 . . . . . . . . . . . Cpe07g00098 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000606 4 19 2 1 2 2 5 2 2 2 2 2 4 2 2 4 2 2 5 2 2 2 2 2 2 2 2 16 5 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00799 Blo_Chr11 FPKM 357.578125 396.076263 420.166534 417.941589 104.88427 121.183861 102.055946 345.687103 343.122498 317.896179