Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00801 ATGAGTTTTACACAAGATATGGAATATGAATACGAAAAACTTATTCGAAGAATGAATCCACCCAGGGTTGTAATTGACAATGAAGCCTGCAAGAATGCCACAGTGATAAGGGTGGATAGCGCGAATAAACACAGAATACTTGTTGATGTTGTACAAGTTCTTACTGATCTCAACCTCATCATAACCAAAGCTTATATTTCATCCGATGGTTCTTGGTTCATGGATGTTTTTAATGTCACTGACCAAGAAGGAAACAAGATTACAAACAAAGAAATTTTGGATTACATAACAAAGTCTCTCGAGTCGGAATCTTGTTTTGCATCTTCGATCGGATCGGTTGGTGTGAAAGGGTCAATGGATCACACATCGATAGAGCTAATTGGAAATGATAGACCTGGACTCCTCTCTGAAATGAGTGCAGTTCTTACCCACCTCAAATGCAATGTGGTCAGTGCTGAAATTTGGACCCATAATACACGGGCAGCAGCCGTAATACAAGTGACAGATGAGGAGACAGGGTCTGCCATTAACGACCAAGAGAAACTATCTAGAATTAAGCAATTACTTTCCAATGTAATCAAAGGAAGCAAAATATCTGGTAGAGCCAAGACTATAATCTCCCATGGGGTTACCCACTTGGATCGGAGGCTTCACCAAATGATGTTTCAAGATCGTGATTTTGAACAAGTGGATGAAGATGATGTTTCGGACGACAAAAAAAGACCAAATGTGAATGTTGTTAATTGGTGTGATAAAGACTACTCTATGGTGACTATCGAGAGTAAAGATCGCCCGAAGCTTCTCTTCGACACTGTATGCACTTTGACGGACATGCAATATGTCATTTTCCATGCGAATATTGACGCAGAAGGGCCCGAAGCTTATCAGGAATATTATATAAGGCATGTAGATGGATCTCCTGTAAAATCAGATGCAGAGCGGCAAAGGATGATTCGATGTCTCGAAGCGGCTATTGAGAGAAGAGCTTCAGAGGGATTGAAGCTCGAACTATGCACGACAGACAGAGTCGGGCTTCTATCTGACGTCACCCGGATCTTCCGGGAGAACAGCCTCGATGTGACAAGAGCAGAAGTGAGCACAAAATCAGGGAAGGCGATAAACACTTTTTACGTTCGAGATGCGTCCGGATATTCAGTTGATTCGAAGACGATAGATACCATTAGGCAAGCAATTGGACAAACTTTACTTAAAGTAAAAAGCAGCCCTGAAGAGTCCAAAACACTTACTCAAGAGTCTGCAACGAGGTTCCTCTTTGGTAGCCTCTTCAAATCTAGATCTTTCGCAAACTTCGGGATGATTCGATCCTACTCTTGA 1335 41.87 MSFTQDMEYEYEKLIRRMNPPRVVIDNEACKNATVIRVDSANKHRILVDVVQVLTDLNLIITKAYISSDGSWFMDVFNVTDQEGNKITNKEILDYITKSLESESCFASSIGSVGVKGSMDHTSIELIGNDRPGLLSEMSAVLTHLKCNVVSAEIWTHNTRAAAVIQVTDEETGSAINDQEKLSRIKQLLSNVIKGSKISGRAKTIISHGVTHLDRRLHQMMFQDRDFEQVDEDDVSDDKKRPNVNVVNWCDKDYSMVTIESKDRPKLLFDTVCTLTDMQYVIFHANIDAEGPEAYQEYYIRHVDGSPVKSDAERQRMIRCLEAAIERRASEGLKLELCTTDRVGLLSDVTRIFRENSLDVTRAEVSTKSGKAINTFYVRDASGYSVDSKTIDTIRQAIGQTLLKVKSSPEESKTLTQESATRFLFGSLFKSRSFANFGMIRSYS 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12495951 12497827 + BLOR03677 Blo11g00801 67001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00801 444 ProSiteProfiles ACT domain profile. 123 201 IPR002912 -
Blo11g00801 444 CDD ACT_ACR_3 254 328 - -
Blo11g00801 444 Pfam ACT domain 122 188 IPR002912 -
Blo11g00801 444 ProSiteProfiles ACT domain profile. 334 410 IPR002912 -
Blo11g00801 444 ProSiteProfiles ACT domain profile. 35 115 IPR002912 -
Blo11g00801 444 SUPERFAMILY ACT-like 330 399 IPR045865 -
Blo11g00801 444 Gene3D - 121 200 - -
Blo11g00801 444 Gene3D - 333 406 - -
Blo11g00801 444 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 3 442 IPR040217 -
Blo11g00801 444 SUPERFAMILY ACT-like 119 194 IPR045865 -
Blo11g00801 444 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 3 442 - -
Blo11g00801 444 SUPERFAMILY ACT-like 30 97 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00801 - - - pop:7489403 726.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00462 Blo11g00801 CCT
Blo01g00462 Blo11g00801 ECH
Blo06g00939 Blo11g00801 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00173 Blo-Chr1:2381496 Blo11g00801 Blo-Chr11:12495951 0 dispersed
Blo03g00385 Blo-Chr3:9155596 Blo11g00801 Blo-Chr11:12495951 1.70E-07 dispersed
Blo07g00660 Blo-Chr7:21594732 Blo11g00801 Blo-Chr11:12495951 9.89E-07 dispersed
Blo11g00801 Blo-Chr11:12495951 Blo17g00230 Blo-Chr17:2345996 2.54E-147 dispersed
Blo10g00400 Blo-Chr10:6832733 Blo11g00801 Blo-Chr11:12495951 3.31E-154 transposed
Blo11g00801 Blo-Chr11:12495951 Blo06g00939 Blo-Chr6:32609995 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00801 Blo_Chr11 FPKM 4.750599 2.853963 6.517205 6.390611 8.304226 6.611843 4.545134 7.96677 5.480941 5.109678