Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00811 ATGGTATCTTGGAGTGTTGCAGAAGCTGGTATTAACCGTGAAGCTCAAATGGGCCCTTCAGAGACATTATTGGCCAATGAGGAGGTACGTGGCCTTGGAAACGAAGTTGCTATTATTTTGCATTCTGTCTCAGCAAATTTAAACGAAGAGGACGATGAGAAACTCCGATCAGCATACCAATCCACTAGTGATGAAGAGATGGACATGGCAGAGATTGGGCGAAATTTAGAGTGGGGCCCACCTTTCCCTCTTCAACACCCTATAAATCCCCCCCGGCTGTCCTCCGACTGCTCCCTCACCGCCCACTCTCCCAACAATCACTCCCAACGCCGTCGTATAGCATCCTCCCAAACCATGCTTTCCAGCGAAACAACTGGATTCCACTACTTCTCGCCGGAAAATCCTCTTGCCGCACCCATGAACTTCACCGCGTTGCAGAGAAATATACCGGACCTCCATTTTCATGGTCTTTTAAGCAACTTTCCGACTTCTCGGTCTCCATTTTCCTGCGAATACACTCCTCCGGTTTCGAGTTTAAGCAACAACTCCACCTCCGACGATGCCGAAGTAAACCAGATGGCTTCCGTAATCGACGAGCGGAAACAGAGGCGAATGGTTTCAAATCGAGAATCGGCTAGAAGATCGAGGATGAGGAAACAAAAGCACCTGAACGAGCTCTGGTCGCAGGTGAATCGGCTCCGATCAGAAAATCACAACCTGATCGATAAATTGAATCACGCATCGGAAGTTCACGACAGAGTTCTTCGAGAAAATGCTCGTCTGAAAGAGGAAGCTTACGATCTTCGCCAAATGCTCACCGACGTCCAAATATGCAGTCCTTTCGCCGCCAGCAGTTTCCAGTCAGAGCTCGAAGACGTCACCTGCAACGCAGCTTATCTCCAAGCTGAATCCTCTTGCCAATCCGTCGCTAACCCCATTTTTGAGCTATGA 951 49.21 MVSWSVAEAGINREAQMGPSETLLANEEVRGLGNEVAIILHSVSANLNEEDDEKLRSAYQSTSDEEMDMAEIGRNLEWGPPFPLQHPINPPRLSSDCSLTAHSPNNHSQRRRIASSQTMLSSETTGFHYFSPENPLAAPMNFTALQRNIPDLHFHGLLSNFPTSRSPFSCEYTPPVSSLSNNSTSDDAEVNQMASVIDERKQRRMVSNRESARRSRMRKQKHLNELWSQVNRLRSENHNLIDKLNHASEVHDRVLRENARLKEEAYDLRQMLTDVQICSPFAASSFQSELEDVTCNAAYLQAESSCQSVANPIFEL 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13286754 13289061 + BLOR03687 Blo11g00811 67011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00811 316 CDD bZIP_plant_GBF1 201 249 IPR045314 GO:0003700|GO:0006355
Blo11g00811 316 Coils Coil 230 264 - -
Blo11g00811 316 Gene3D - 198 254 - -
Blo11g00811 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 245 IPR004827 GO:0003700|GO:0006355
Blo11g00811 316 SMART brlzneu 196 260 IPR004827 GO:0003700|GO:0006355
Blo11g00811 316 MobiDBLite consensus disorder prediction 201 220 - -
Blo11g00811 316 Pfam bZIP transcription factor 200 251 IPR004827 GO:0003700|GO:0006355
Blo11g00811 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Blo11g00811 316 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 119 312 IPR044521 -
Blo11g00811 316 PANTHER BZIP PROTEIN (ATBZIP48) 119 312 - -
Blo11g00811 316 SUPERFAMILY Leucine zipper domain 200 248 IPR046347 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00811 - - - vvi:100258132 243.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo11g00811 Blo16g01070 CCT
Blo06g00950 Blo11g00811 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00829 Blo-Chr5:30082294 Blo11g00811 Blo-Chr11:13286754 5.85E-16 dispersed
Blo11g00333 Blo-Chr11:2773553 Blo11g00811 Blo-Chr11:13286754 1.31E-37 dispersed
Blo11g00811 Blo-Chr11:13286754 Blo12g00367 Blo-Chr12:19977581 2.85E-39 dispersed
Blo12g00234 Blo-Chr12:15001139 Blo11g00811 Blo-Chr11:13286754 2.49E-06 dispersed
Blo16g00335 Blo-Chr16:9466192 Blo11g00811 Blo-Chr11:13286754 8.74E-17 dispersed
Blo18g00802 Blo-Chr18:23408120 Blo11g00811 Blo-Chr11:13286754 7.10E-17 dispersed
Blo11g00811 Blo-Chr11:13286754 Blo06g00950 Blo-Chr6:32717700 7.92E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001521 7 2 3 4 4 2 3 2 2 1 2 2 4 2 2 2 2 0 3 2 2 2 2 2 2 2 2 3 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12948 PF00170 bZIP_1 7.60E-11 CL0018 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00811 Blo_Chr11 FPKM 97.783295 100.97538 95.101639 86.184395 121.597145 134.04068 127.723015 102.953384 102.984802 109.581749