Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00839 ATGGTCAATACGTGCTTCATGGGCAAGGAAGAAAATGAGGTAAACGTTTCTTCTAGTGATTTAGAAGATAATGTTGATGAAGATGAATTGCTTAATGCTTTCAATGAGCTATATGATCAATTTAGCATGCTTAAACAAAAGTTTGGTCTGGTCCGGGTGGCCTGCCTACAGGTTGAGCGGGTGTCGTTGGCGGGGAAACGCATCACCGAATCAAGCGGCGATGGTGAGTCTTCACAGATAACCTTCACTGGTGCGGTTCCTTCAAGCTTCAATGTTCAAGTCCCAAATGATGTGAAAAACCTTCAGACCGAATGCCCCCTTGTAGTAATAGGAGCTACTTACTATGACTCATATAGGAAAACTTCTGAGTTTATATTGTATGAATCCGCGGTACTAGCCATGGTTCTTGTTTCTGACGTCAAGAAAAACATTGAAGCTGTTCAGGGTGTTGATGTTTATCCTGCTGCACAAACCATGCTAATTCATCAGGGGAAGGTCCTCAAAGATGGATCCACTCTGGATGAAAATAAAGTTGCCGAAAATAGTTTTATTGTGGTTATGCTAACAAAGGTAACTAGCGGGAAACTTTTAATTGAAGAAAAACCAAATAGAAGAGAAAATAAATGTCATGAAATGACTACTTTTTATTCCATGGCTGCTGTTAGCCATTATGACAAAATTCTAATTTTCTTCAATCAACATGACAGAATAAGAGCTCATCTGGTGAAGCTTCAACCAATAGACCTGCAACTGCAGCAACAAAGTGAAAACAATGCGTCAATAGAGTGTAATTTTATGGTATTAATTGTCATCTCCTTTATGCAGGTTCCAGAGACGAGTGCAGTGCCTCCTGCCTCAATTCCTGTGGTCACTGCACAACCTACTCCTGAAGTACTCCCAGTTCCCTCAGATGCTGACATGTATGGCCAAGCAGCATCTAATCTGGTTGCTGGCAATATCTTAGAGCAGACCATACAACAAATTCTGGATATGGGTGGAGGAAACTGGGATAGGGATACTGTTGTTCGAGCTCTGCGAGCTGCATACAATAATCCGGAGAGAGCCGTTGAATATCTATATTCTGGTATACCGGAGCAAGCTGAAGTTCCACCTGTGGCTGTTCCTCCTGGGCCAGCTGCAACTCCTCAAATGCAGCCTCCTCAGCCTGTTCAACCAGAAACTGTTCCATCAAGTGGTCCAAATGCTAATCCTTTAGACCTCTTTCCCCAGGGTCTTCCAAGTGTAGGTTCAGGTGCTGCTGGTGCAGGGACACTTGATTTCTTACGCAACAGCCAGCAGTTTCAAGCTTTGAGGGCAATGGTGCAGGCTAACCCACAGATTTTGCAGTCCATGCTTCAAGAGCTAGGTAAACAAAATCCAGTTCTTATGAGGCTAATTCAAGAGCATCAAGCTGACTTTCTCCGGCTTATCAATGAGCCTGTTGAAGGAGGAGAGGGGAATATACTAGGGCAGCTGGCAGCAGCAATGCCACAGGCTGTAACTGTAACCCCTGAAGAGCGAGAAGCCATTCAACGGCTTGAAGCGTTGGGGTTCGACAGAGCAATTGTTTTGGAAGTTTTCTTCGCTTGCAACAAGAACGAGGAGCTGGCTGCGAACTATCTTCTAGATCACATCCATGAATTCGAGGATTGA 1653 44.16 MVNTCFMGKEENEVNVSSSDLEDNVDEDELLNAFNELYDQFSMLKQKFGLVRVACLQVERVSLAGKRITESSGDGESSQITFTGAVPSSFNVQVPNDVKNLQTECPLVVIGATYYDSYRKTSEFILYESAVLAMVLVSDVKKNIEAVQGVDVYPAAQTMLIHQGKVLKDGSTLDENKVAENSFIVVMLTKVTSGKLLIEEKPNRRENKCHEMTTFYSMAAVSHYDKILIFFNQHDRIRAHLVKLQPIDLQLQQQSENNASIECNFMVLIVISFMQVPETSAVPPASIPVVTAQPTPEVLPVPSDADMYGQAASNLVAGNILEQTIQQILDMGGGNWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVPPVAVPPGPAATPQMQPPQPVQPETVPSSGPNANPLDLFPQGLPSVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQSMLQELGKQNPVLMRLIQEHQADFLRLINEPVEGGEGNILGQLAAAMPQAVTVTPEEREAIQRLEALGFDRAIVLEVFFACNKNEELAANYLLDHIHEFED 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14353545 14364164 - BLOR03715 Blo11g00839 67039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00839 550 Gene3D - 71 191 - -
Blo11g00839 550 SUPERFAMILY UBA-like 487 547 IPR009060 GO:0005515
Blo11g00839 550 TIGRFAM rad23: UV excision repair protein Rad23 137 549 IPR004806 GO:0006289
Blo11g00839 550 MobiDBLite consensus disorder prediction 375 394 - -
Blo11g00839 550 PANTHER UV EXCISION REPAIR PROTEIN RAD23 274 549 - -
Blo11g00839 550 PANTHER UV EXCISION REPAIR PROTEIN RAD23 135 193 - -
Blo11g00839 550 Pfam Ubiquitin family 137 190 IPR000626 GO:0005515
Blo11g00839 550 ProSiteProfiles Ubiquitin domain profile. 137 193 IPR000626 GO:0005515
Blo11g00839 550 SMART CBM 423 466 IPR006636 -
Blo11g00839 550 Gene3D - 416 481 IPR036353 GO:0003684|GO:0006289|GO:0043161
Blo11g00839 550 Pfam UBA/TS-N domain 506 541 IPR015940 -
Blo11g00839 550 Pfam UBA/TS-N domain 321 359 IPR015940 -
Blo11g00839 550 Gene3D - 314 364 - -
Blo11g00839 550 CDD Ubl_Rad23 137 188 - -
Blo11g00839 550 SUPERFAMILY UBA-like 319 370 IPR009060 GO:0005515
Blo11g00839 550 SUPERFAMILY XPC-binding domain 421 487 IPR036353 GO:0003684|GO:0006289|GO:0043161
Blo11g00839 550 CDD UBA1_Rad23_plant 315 364 - -
Blo11g00839 550 SMART ubq_7 119 189 IPR000626 GO:0005515
Blo11g00839 550 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 274 549 - -
Blo11g00839 550 PANTHER EXCISION REPAIR PROTEIN RAD23, PUTATIVE-RELATED 135 193 - -
Blo11g00839 550 MobiDBLite consensus disorder prediction 375 398 - -
Blo11g00839 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 319 362 IPR015940 -
Blo11g00839 550 PRINTS DNA repair protein Rad23 signature 500 516 IPR004806 GO:0006289
Blo11g00839 550 PRINTS DNA repair protein Rad23 signature 451 473 IPR004806 GO:0006289
Blo11g00839 550 PRINTS DNA repair protein Rad23 signature 517 531 IPR004806 GO:0006289
Blo11g00839 550 PRINTS DNA repair protein Rad23 signature 532 547 IPR004806 GO:0006289
Blo11g00839 550 Gene3D - 498 545 - -
Blo11g00839 550 SUPERFAMILY Ubiquitin-like 136 192 IPR029071 -
Blo11g00839 550 SMART uba_6 321 361 IPR015940 -
Blo11g00839 550 SMART uba_6 506 543 IPR015940 -
Blo11g00839 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 503 544 IPR015940 -
Blo11g00839 550 Pfam XPC-binding domain 425 480 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00839 K10839 RAD23, HR23; UV excision repair protein RAD23 - gmx:100813881 468.388
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00641 Blo-Chr6:29407311 Blo11g00839 Blo-Chr11:14353545 2.08E-14 dispersed
Blo11g00839 Blo-Chr11:14353545 Blo05g00169 Blo-Chr5:1516838 1.56E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g298 . . . . . Bpe10g00939 Bma14g01707 Bma15g00085 . Cmo18g01038 . Cma18g01028 . Car18g00948 Sed06g1882 Cpe09g00295 . Bhi07g01334 Tan04g0868 Cmetu10g1073 Lac13g0486 Hepe01g1200 . . Cla05g02307 . Cec05g2503 Cco05g2545 . . Cre05g2454 Cone13ag0836 Cone19ag0843 . . Lsi04g00262 Csa05g02604 Chy10g01139 Cme10g00268 . Blo11g00839 Bda07g01534 . Bpe11g01698 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004990 1 1 1 2 2 0 2 1 1 1 1 0 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00839 Blo_Chr11 FPKM 0.337758 0.664033 0.452754 0.724658 1.351824 0.993362 1.282 0.564983 0.83549 0.550388