Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00874 ATGGCTCTTGCAATTCAACCCAACCTTCATCCCCGTAGCTCCCCGGTTGGGATCAAGCACGGACCTTCGGATACCCACCACGATCGTCTTCTTCATTTGCTAAATGAATGTCCAAACATGTCTCTGCTCAAGCAAATCCACGCTCAAACTCTGCGAACCACATCGACCCATGATCCAACCTCCATTTTTCTCTACCGTAAAATTCTTCATTTTGCTTGTTCTTCCGATTTCGACTACGCGTATCGAGTTTTCATCCAAATCGAGAACCCAAATTCATTCATGTGGAACACAGTGATCGGGGCCTGTGCTCGAAGCTCTGAGCGAAAATGGCAAGCGATGATTGTGTTCTGTAAAATGTTGGATAATGGATTAGTTTTGCCGGATAAACATACGTTTCCTTTTCTGCTTAAAGCGACGGCTTACTTGTTTGCTCTTTCTGAAGGTAAGCAGGCACATGCTCAGATTATAAAACTTGGGTTGAGCTCAGATATTTATGTTTGTAATAGCTTGATTCATTTCTACGCGTCTTGCGGGTGTTTGTATTTTGCATTGAAAGTGTTTGAAAAAATGTCTCAAAGAAGTTTAGTTTCCTGGAATGTAATGATCGATGCATTTATTCAGTTTGGGGAGTTCGAAAAGGCGTTGAATCTATTTTCTGAAATGAAGAATAGTTTTGAACCGGATGGGTATACAATGCAGAGCGTGATAAGCGCTTGTGCGGGGAAGAAAGCTTTATCTCTGGGTATGTGGGCTCATTCTTATGTGCTGAGGAAGCTTGATACTTCCATGGCTACCGAAATTCACCTCAACTCTTCACTGGTTGATATGTACTGCAAATGTGGTTGCTTGAAATTTGCTCAACAAGTTTTTGAAGCCATGCCCAAGAGGGATTTGAATACTTGGAACGCGATGATTTTAGGATACGCCATGCATGGAGAGGCCGAGGCTGCATTTGCATGTTTTGATCGATTGGTGAAGATTGAAAATTTAGCCCCGAATTCAATCACATTTGTTGGCATTCTCAGTGCGTGTAATCATCGAGGCATGGTTAGCGAGGGGCGTAAGTATTTTGATATGATGATTGGGGAGTACAAGATCGAACCCCAACTAGAGAACTATAGTTGCTTGGTCGATCTTCTTGCTCGTTCCGGTTTCATCAACGATGCTTTAGAATCAGTGAGAAATATGCCCGTTAAACCCGACGTGGTAATCTGGAGGTGTCTTCTTGACGCATTGTGCAAGCAAAATGCAAATATCGAGCTGAGCAAAGAAGTAGCTCATGGGATTCTTCAGTCCGGAAATAGCGACTCCAGTGGAGTCTACGTGTTGTTGTCAAGGGTATACGCTTTGGCCGAAAATTGGAATGAAGTTGGAGTCATAAGAAAACTAATGACAGAAAAGGGCGTGAAAAAGGAGCCGGGTTGTAGTCTAATCGAAGTCGATGATTATTCGCAGGCACGTATGGTTGATGAAATCCACAAGGTGAAAGGAGAGTCATTGAGGTTGCATAGAGAGAGGCTTGCCGTTTCTTTCGGCCTCCTGAGCTTGGAACAAGAGGGTTCGAAATCAGGACCTCGCAGGAACATAAGGTTGTTGAAGACCGATTATATTAAGGAGTTCTCGTTTTTAGGTCAATTTGAAGACCCTCTCGATTTGAAAAAATGTTACCTTGATCTTGCTAGTCTTCAAGCTAGAGAAGAGCTGGCTATCAAACAGGCGGAAGCGGAGGCTGAGAGGATAGGCGTGGGGGTTACCAACGAGGCGCAGAGCATATTTGACGCTTTGTCTAAAACTTATGCTATAACCAACATTTTCAATCAATTGGTTGCAAAAGTAGAAGACAGACAACCAAGGGGTTTTGGGAAAGTTCTGAGTGAGCAAATTGGAGATAATGTGAGGGGGTGGGAAGAATACGAAAAAATAATAATCCTCGAAGAAAGGTTAGAGGCACTGAAGAAGGCAGAGATGGAAAATGAACTTGGGGAGAACATTGGTGGGAAAATCGTGCTGGCACAAAATGAGGAGGCGGTTGAAGAGCTTGTGACAGAAAAAATCTGGGAAAAAAAGATGGGAAATGAGTATTTTAATGCAGAGATGGAAAATGAACTTGGGGAGAACATGGGTGGGAAAATTGTGCCGGTGGAAAATGAGGAGGCGGTTGAAGAGCTTGTGTTGGAAACGATCGAGGAAACGGCCGAAGAGCTTTTGACGGAAAAATTTGGGGAAAAAAAGATAGGAAAGTCGCGACTACAGGAGAGGGGCCGGCGATGGTGGAATGGGAAGCGCTAG 2289 43.82 MALAIQPNLHPRSSPVGIKHGPSDTHHDRLLHLLNECPNMSLLKQIHAQTLRTTSTHDPTSIFLYRKILHFACSSDFDYAYRVFIQIENPNSFMWNTVIGACARSSERKWQAMIVFCKMLDNGLVLPDKHTFPFLLKATAYLFALSEGKQAHAQIIKLGLSSDIYVCNSLIHFYASCGCLYFALKVFEKMSQRSLVSWNVMIDAFIQFGEFEKALNLFSEMKNSFEPDGYTMQSVISACAGKKALSLGMWAHSYVLRKLDTSMATEIHLNSSLVDMYCKCGCLKFAQQVFEAMPKRDLNTWNAMILGYAMHGEAEAAFACFDRLVKIENLAPNSITFVGILSACNHRGMVSEGRKYFDMMIGEYKIEPQLENYSCLVDLLARSGFINDALESVRNMPVKPDVVIWRCLLDALCKQNANIELSKEVAHGILQSGNSDSSGVYVLLSRVYALAENWNEVGVIRKLMTEKGVKKEPGCSLIEVDDYSQARMVDEIHKVKGESLRLHRERLAVSFGLLSLEQEGSKSGPRRNIRLLKTDYIKEFSFLGQFEDPLDLKKCYLDLASLQAREELAIKQAEAEAERIGVGVTNEAQSIFDALSKTYAITNIFNQLVAKVEDRQPRGFGKVLSEQIGDNVRGWEEYEKIIILEERLEALKKAEMENELGENIGGKIVLAQNEEAVEELVTEKIWEKKMGNEYFNAEMENELGENMGGKIVPVENEEAVEELVLETIEETAEELLTEKFGEKKIGKSRLQERGRRWWNGKR 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17104023 17109020 + BLOR03750 Blo11g00874 67074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00874 762 Pfam PPR repeat family 195 240 IPR002885 -
Blo11g00874 762 Pfam PPR repeat family 297 344 IPR002885 -
Blo11g00874 762 Pfam E motif 417 479 IPR046848 -
Blo11g00874 762 TIGRFAM PPR: pentatricopeptide repeat domain 196 223 IPR002885 -
Blo11g00874 762 TIGRFAM PPR: pentatricopeptide repeat domain 300 326 IPR002885 -
Blo11g00874 762 TIGRFAM PPR: pentatricopeptide repeat domain 165 195 IPR002885 -
Blo11g00874 762 Pfam Anticodon-binding domain 557 600 IPR019181 -
Blo11g00874 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 193 IPR002885 -
Blo11g00874 762 Gene3D Tetratricopeptide repeat domain 23 144 IPR011990 GO:0005515
Blo11g00874 762 Gene3D Tetratricopeptide repeat domain 145 247 IPR011990 GO:0005515
Blo11g00874 762 Pfam PPR repeat 166 193 IPR002885 -
Blo11g00874 762 PANTHER OS01G0913400 PROTEIN-RELATED 22 484 - -
Blo11g00874 762 Gene3D Tetratricopeptide repeat domain 265 496 IPR011990 GO:0005515
Blo11g00874 762 SUPERFAMILY TPR-like 73 334 IPR011990 GO:0005515
Blo11g00874 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 224 IPR002885 -
Blo11g00874 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 91 126 IPR002885 -
Blo11g00874 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 332 IPR002885 -
Blo11g00874 762 PANTHER BNAC04G18690D PROTEIN 22 484 - -
Blo11g00874 762 SMART AD_2 553 641 IPR019181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00874 - - - cmo:103489069 686.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00874 Blo-Chr11:17104023 Blo11g00578 Blo-Chr11:5646631 1.38E-104 dispersed
Blo11g00874 Blo-Chr11:17104023 Blo06g00358 Blo-Chr6:21413111 1.15E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g836 . . . . . . Bma14g01744 . Cmo04g01697 . . . . . . . Cpe01g01432 Bhi07g01635 . . . . . . Cla05g02489 . . . . . . Cone13ag0987 . . . Lsi04g00486 . Chy10g00959 Cme10g00466 . Blo11g00874 . . . . . . . . . Cma04g01619 . Car04g01661 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012298 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00874 Blo_Chr11 FPKM 2.911558 2.555268 1.297247 0.934899 10.647572 12.634064 13.908529 1.895985 1.761322 3.01173