Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00894 ATGGATCCGCAATCAGTGAACCAGAGGCATTTTCAGAGATCGAATTCTAATTCGGCGTGTTACAATCTATCGGAGATCTGGAACCTTCCTATCAACGGCGCTATTGAAAAATCTGGAGGAGGATTAAACTTAAGAACTCCTTGTTTTGGGAAGAACACGAGCCAGATTGGGGACGTTTCGACTGCAGAATCGGCGAGCTTCGAGCAATTACCTGTCAATGGCGGTTGCAGAAAGCGAGGAGGCGGAGAGGACGAGTCTTCCAAATTCCCGGTAAGCATTAGTCTACTTAAATACAGCACGAATTTTAGCTTAATCACATCTTGGTTGCTAAATGAACTTTCTAGCTGCAGTAATGGAAAACGGGATAAGAAAGCAGGATCGAAGGATGAGGGAGATGAAAGAGGGAAGAAAGATTACATCCACGTTCGAGCGAGAAGGGGGCAAGCTACTGATAGTCACAGTTTAGCCGAGAGAGCTAGACGTGAAAAGATAAGCGAGAGAATGAAGATTCTCCAAGACATAGTCCCAGGGTGTAATAAGGTTATTGGGAAAGCAATTGTTCTCGACGAGATAATCAATTACATTCAGTCTCTACAACGTCAGGTTGAGTTTTTATCTATGAAGCTTGAAGCAGTGAATTCAAAACTCATGTCGGACAACGCAATGACAGAGTTTCCTTGTAAAGATCTTGGGTACAGGGCTACTCTCTCCACATATCCTTCACAAATAAACCCAGAATACGACTGTGGATCTGCGTCGCATGAGTGGCTCACCCGCGGCTTCGAAAGAAGTAATAGACTAAACTCTGCAACTTTCTCCTCCACCACCAATAAAACAATGTACAAGTAA 849 43.93 MDPQSVNQRHFQRSNSNSACYNLSEIWNLPINGAIEKSGGGLNLRTPCFGKNTSQIGDVSTAESASFEQLPVNGGCRKRGGGEDESSKFPVSISLLKYSTNFSLITSWLLNELSSCSNGKRDKKAGSKDEGDERGKKDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKAIVLDEIINYIQSLQRQVEFLSMKLEAVNSKLMSDNAMTEFPCKDLGYRATLSTYPSQINPEYDCGSASHEWLTRGFERSNRLNSATFSSTTNKTMYK 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17912638 17914158 + BLOR03770 Blo11g00894 67094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00894 282 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 263 IPR024097 GO:0006355
Blo11g00894 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 215 IPR036638 GO:0046983
Blo11g00894 282 Coils Coil 282 282 - -
Blo11g00894 282 Gene3D - 145 224 IPR036638 GO:0046983
Blo11g00894 282 PANTHER BNAC05G07950D PROTEIN 1 263 - -
Blo11g00894 282 SMART finulus 154 204 IPR011598 GO:0046983
Blo11g00894 282 Coils Coil 195 215 - -
Blo11g00894 282 MobiDBLite consensus disorder prediction 118 138 - -
Blo11g00894 282 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Blo11g00894 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Blo11g00894 282 CDD bHLH_AtBPE_like 138 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00894 - - - vvi:100256975 213.386
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00412 Blo11g00894 CCT
Blo01g00412 Blo11g00894 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00894 Blo-Chr11:17912638 Blo13g00032 Blo-Chr13:522851 9.70E-61 dispersed
Blo11g00894 Blo-Chr11:17912638 Blo01g00412 Blo-Chr1:4665092 2.13E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g814 Blo01g00412 . Bda01g02247 Bda11g01242 Bpe13g00471 . Bma14g01759 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0995 Cone19ag0986 . . . . . . . Blo11g00894 . Bda11g01242 . . Bma01g00077 . . . . . . . . . Cpe07g00608 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019320 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12957 PF00010 HLH 2.80E-08 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00894 Blo_Chr11 FPKM 16.843189 18.000933 17.935831 15.589735 12.496538 11.064459 11.010543 7.131995 8.05281 7.324669