Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00898 ATGTTGCCTCCAAGTTCAAATACCTTCAAAAACCTCTTACCTTGGTCTGTCTACGCCTTCATTCCGTTAGCTTTCTTCAGCTTTTACCTTTATTCTCTCCATTCCTTTGTATCTTATTCCAATCACCATTCCCATTTCTCCCTCCCTCCCTCTTCTCTTTCTGCCCCTCCATTTTCTCTCTCCTCTCCATCTCCTCCTCCTCCTCCTCCTCCTCCCCCCGCAGAAGTTTTATGCAACTACGAACATGGAAAATGGGTTAATGACGAGGGCGGACCTTTATACAACGATACAGTCTGCAATACAATCAAGGAAGGCCAGAACTGCATTGCCCATGGAAAAGCCAATTTGAGTTACCTCCATTGGAGGTGGAAGCCAAAGCAATGCGAGCTCCAAAGGTTTGAACCCATAGCTTTTCTGCAACTCTTCAAAAACAAACGTCTAGCATTTGTAGGTGACTCCATGGCCAGAAATCAGCTGGAATCTCTTTTGTGCATGTTGGCCACTGCTTCTCATCCTAATCTCCTTTACTCTGACGAAGAGAAAAAGTTTAGAAGGTGGCATATTTCTTCTCACAATATAGTTATATCTATTTATTGGTCACCTTTTTTGGTGCAAGGAGTCGAGAAATCAAACACAGGGAAGCCGAATTATAATACGTTGTATTTGGACAAGATCAACGAGAGATGGGGAGGCGATATTGGCGATTTTGATATGATTGTATTGTCCATCGGCCATTGGTATCTTCTCCCTGCAGTTTATTTTGAGGGCGATTCTGCCTTGGGCTGCCATTACTGTCCTGAACTTAACTACACAGAAGTCGGATTTTATGATGTGTTTAGAAAGGCGTTGAGGACGGCCCTGGACACAATAATTGAAAGGACAAAGGACAGAAATGGTGGAATTGATGTGTTTTTAACGACATTTTCGCCGGCTCATTTCGAAGGTGAGTGGGACAAGGTTGACTCTTGTGATAAAACCAGGCCTTATGAGGAGGGGGAGAAGGAGGTTGAAGGGATGAATGGGGAAATGAGGAAAATTCAGGTTGAGGAAGTGGAGGGAGCTAAGAGAAGGGCTAGGCCATTTGAGAAGGCGAGAATTGTGGCGTTAGATGTGACGAAATTGTCATTGATGAGGCCGGATGGGCATCCGGGGCCGTATATGCATCCGTTTCCATTTGCTAATGGAGTTAAGGATCGAGTGCAGAATGATTGTGTTCACTGGTGTTTGCCGGGGCCTGTTGATACGTGGAATGAGATTCTTTTGCAGATTATGAGAAATCAGATGTGA 1287 44.6 MLPPSSNTFKNLLPWSVYAFIPLAFFSFYLYSLHSFVSYSNHHSHFSLPPSSLSAPPFSLSSPSPPPPPPPPPAEVLCNYEHGKWVNDEGGPLYNDTVCNTIKEGQNCIAHGKANLSYLHWRWKPKQCELQRFEPIAFLQLFKNKRLAFVGDSMARNQLESLLCMLATASHPNLLYSDEEKKFRRWHISSHNIVISIYWSPFLVQGVEKSNTGKPNYNTLYLDKINERWGGDIGDFDMIVLSIGHWYLLPAVYFEGDSALGCHYCPELNYTEVGFYDVFRKALRTALDTIIERTKDRNGGIDVFLTTFSPAHFEGEWDKVDSCDKTRPYEEGEKEVEGMNGEMRKIQVEEVEGAKRRARPFEKARIVALDVTKLSLMRPDGHPGPYMHPFPFANGVKDRVQNDCVHWCLPGPVDTWNEILLQIMRNQM 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17999876 18001692 + BLOR03774 Blo11g00898 67098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00898 428 Pfam PMR5 N terminal Domain 78 129 IPR025846 -
Blo11g00898 428 Coils Coil 329 349 - -
Blo11g00898 428 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 130 422 IPR026057 GO:0016740
Blo11g00898 428 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 8 426 IPR029962 GO:0016413
Blo11g00898 428 PANTHER PROTEIN ALTERED XYLOGLUCAN 4 8 426 - -
Blo11g00898 428 SUPERFAMILY Formin homology 2 domain (FH2 domain) 63 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00898 K23877 AXY4, AXY4L; xyloglucan O-acetyltransferase - jre:108985449 556.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00898 Blo-Chr11:17999876 Blo17g00413 Blo-Chr17:4885895 7.73E-93 dispersed
Blo11g00898 Blo-Chr11:17999876 Blo03g00326 Blo-Chr3:6834067 9.26E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g785 . . . . . . Bma14g01775 . . . . . . . . . . Bhi07g01703 . . . . . . . . . . . . . . . . . . . . . . Blo11g00898 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012051 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00898 Blo_Chr11 FPKM 36.17387 33.312912 29.057901 24.453302 56.932217 68.427559 56.634827 25.556318 28.070139 24.822453