Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00903 ATGATTCGGGCTGTTCGTGCCTGTAAAACGGCAGCAGAAGAACGTGCTGTTATAAGAAAAGAGTGTGCTGCCATTCGTGCAGCAATTAATGAAAATGATTACGATTATAGGCACCGTAACCTTGCGAAGCTGATGTTCATTCACATGCTTGGTTACCCTACACATTTTGGTCAAATGGAGTGCTTGAAGTTGATTGCATCCGCAGGTTTCCCTGAGAAGAGAATAGGATATCTTGGCCTTATGTTGCTTCTTGATGAAAGACACGAAGTTTTGATGTTGGTCACAAACTCATTAAAACAAGATTTGAATCATTCAAACCAGTATATTGTTGGACTTGCTCTTTGTGCTTTAGGAAATATTTGCTCAGCAGAAATGGCACGGGACCTTGCACCAGAAGTTGAAAGACTATTGCAGTTTAGAGACCCTAATATTCGGAAGAAAGCAGCATTGTGTTGTATAAGGATTATAAAGAAAGTCCCAGACCTAGCAGAGAATTTTGTAAATCCGGCAACCTCTTTGCTTAAAGAAAAGCACCATGGTGTGCTCATCACAGGAGTTCAACTTTGTACAGATCTTTGTAAAGTTAGTTCAGAAGCTCTTGAATATTTTAGAAAGAAATGCACAGAGGGCTTGGTCAAGACCCTTAAGGATTTGGTGAACAGTTCATATACACCAGAGTTTGACGTAGCTGGTATTACAGACCCATTCCTCCATATTCGGTTGCTTAGGTTTCTGCGTGTATTAGGCCATGGAGATGCTGATGCAAGTGACTGTATGAATGATATACTCGCACAGGTGGCTACAAAAACTGAGTCAAACAAAAATGCAGGGAATGCGATTCTATATGAATGTGTTGAAACTATTATGAGCATTGATGATAATGGAGGTTTACGTGTGCTAGCTATAAATATATTGGGAAGATTTTTATCAAATCGTGACAACAATATCAGATATGTGGCATTAAACATGCTTATGAAGGCTATTATGGTCGATGCTCAAGCAGTACAGAGGCATCGAGCAACGATATTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGTAAAAGGGCCCTTGAACTTGTTTATCTTCTAGTGAACGACAGTAATGTAAAGTCTCTTACCAAAGAATTGATTGAATATCTTGAAGTAGCTGATGAAGAATTTAAGGGAGATCTTACGTCAAAAATTTGCACAATTGTTGCAAAGTTTTCCACAGAGAAGATTTGGTACATAGATCAAATGCTTAAGGTTCTTTCTGAGGCTGGAAATTTTGTTGAAGATGAGGTTTGGCATGCACTTATTGTCATGATAAGCAATGCTACTGACCTCCATGGATACACTGTAAGAGCATTATACAGAGTGTTCCAATTATCTACTGAACAGGAAAGTCTTGTCCGAGTGGCTGTTTGGTGCACTGGGGAATATGGTGACATGTTGGTTAATAATGTTAAGATGTTAGACACAGAGGATCCTATAACGGTGACCGAGTCTGACATCGTGGATGTCATAGAGACTGCTATTAAGCGCCATTCTTCTGATCTTACCACTCAATCAATGGCATTGGTTGCCCTGTTGAAGCTTTCTTCTCGTTTTCCTACTATATCTGGGAGGATCAAAGATATAATTGTCCAATTCAAAGGAAGCTTGGTTCTTGAACTGCAGCAAAGATCTATTGAATTCAACTCAATCACTGTAAGGCATCAAAATATCAGGTCCACGTTAGTTGAAAGAATGCCAGTTCTGGATGAAGCAACATTTCTTGGAAGGAAGGCAGGGGCTATGCCTACAACTGTTTCAACTCCAAATGGGGCATCCATTAATCTTCCAAATGGAGTTGCTAAACCTACAGCAGCTCCACTGGTAGATTTACTTGACCTGAGTTTAGATGATGCTCCTGTGACTAGCTCTTCTGGCGGTGATTTCCTCCAGGATCTTCTTGGTATTGATTTATCACCAGCTCAGCCTGTTTCAGGTGCGAAAGACTCACAGAGAACTGGTACAGATGTTCTACTGGATCTTTTGTCTATAGGAACACCTCCAATAAGCACCCTAACATCAAATGATTTATCAGCCAAATCAGAAAACAAAACACCTACTGCATTAGATGGGCTCTCGTCTCTCTCGCCACTTCCCACACGTGCCACTTCTGCTGCTGGAGCGGCTCCTGCTGTGGATTTGTTAGACTGCTTTGCACATAGCCCAACAACTTCTGAAGACACCAGTCCACAATATCCATCTGTTGTTGCATACGAGAGCAGCTCCTTGAGAATGACTTTTAACTTCTCTAAATTGCCTGGCAGTCCACAAACAACATTAATCCATGCCACTTTTAATAATTTATCTCCAAATACCTATACGAATTTCATTTTTCAAGCCGCAGTTCCAAAGTTTCTTCAACTGCAGCTAGATCCAGCCAGTGGTGATACTCTCCCTAGAAGTGGCAATGGTTCCATTACTCAAACTTTGAGAGTGACTAACAACCAACATGGAAAGGTATTTTCTGATGTTCACTCTCATTTATCTAAACGAGAACTATATTACAAGACACTTGCAGGTGTTTTTTGTACATTAACGGAGAAAACTCCTGTGCGACCCTGTGGGGATAAATTTTGGCCTCTGCTTCACGTAGAGGATGGAGCTCACATGTCATTTTCTGCATTCAAGGTACTCTATTTTTGA 2679 40.65 MIRAVRACKTAAEERAVIRKECAAIRAAINENDYDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERHEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCCIRIIKKVPDLAENFVNPATSLLKEKHHGVLITGVQLCTDLCKVSSEALEYFRKKCTEGLVKTLKDLVNSSYTPEFDVAGITDPFLHIRLLRFLRVLGHGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIDDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAIMVDAQAVQRHRATILECVKDSDASIRKRALELVYLLVNDSNVKSLTKELIEYLEVADEEFKGDLTSKICTIVAKFSTEKIWYIDQMLKVLSEAGNFVEDEVWHALIVMISNATDLHGYTVRALYRVFQLSTEQESLVRVAVWCTGEYGDMLVNNVKMLDTEDPITVTESDIVDVIETAIKRHSSDLTTQSMALVALLKLSSRFPTISGRIKDIIVQFKGSLVLELQQRSIEFNSITVRHQNIRSTLVERMPVLDEATFLGRKAGAMPTTVSTPNGASINLPNGVAKPTAAPLVDLLDLSLDDAPVTSSSGGDFLQDLLGIDLSPAQPVSGAKDSQRTGTDVLLDLLSIGTPPISTLTSNDLSAKSENKTPTALDGLSSLSPLPTRATSAAGAAPAVDLLDCFAHSPTTSEDTSPQYPSVVAYESSSLRMTFNFSKLPGSPQTTLIHATFNNLSPNTYTNFIFQAAVPKFLQLQLDPASGDTLPRSGNGSITQTLRVTNNQHGKVFSDVHSHLSKRELYYKTLAGVFCTLTEKTPVRPCGDKFWPLLHVEDGAHMSFSAFKVLYF 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18436124 18448584 - BLOR03779 Blo11g00903 67103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00903 892 Pfam Adaptin N terminal region 14 564 IPR002553 GO:0006886|GO:0016192|GO:0030117
Blo11g00903 892 Gene3D - 738 836 - -
Blo11g00903 892 PIRSF AP1_gamma 1 837 IPR017107 GO:0005794|GO:0016192|GO:0030121
Blo11g00903 892 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 742 858 IPR008153 -
Blo11g00903 892 SMART alpha_adaptinc2 739 841 IPR008152 GO:0006886|GO:0016192
Blo11g00903 892 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 1 832 - -
Blo11g00903 892 SUPERFAMILY Clathrin adaptor appendage domain 720 832 IPR013041 -
Blo11g00903 892 MobiDBLite consensus disorder prediction 684 707 - -
Blo11g00903 892 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 1 832 - -
Blo11g00903 892 Gene3D - 1 582 IPR011989 -
Blo11g00903 892 SUPERFAMILY ARM repeat 13 581 IPR016024 -
Blo11g00903 892 Pfam Adaptin C-terminal domain 745 831 IPR008152 GO:0006886|GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00903 K12391 AP1G1; AP-1 complex subunit gamma-1 - tcc:18609417 1336.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00868 Blo11g00903 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00030 Blo-Chr8:256779 Blo11g00903 Blo-Chr11:18436124 1.30E-77 dispersed
Blo11g00903 Blo-Chr11:18436124 Blo16g00133 Blo-Chr16:3023539 5.44E-25 dispersed
Blo03g00912 Blo-Chr3:35124159 Blo11g00903 Blo-Chr11:18436124 2.54E-65 transposed
Blo11g00903 Blo-Chr11:18436124 Blo06g00868 Blo-Chr6:31968381 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00903 Blo_Chr11 FPKM 30.820511 25.049215 49.438503 50.903141 34.52095 46.680847 32.624119 11.042655 8.916286 9.688675