Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00910 ATGGCGGACTCTCCGTCTGCTGCCACAGAATCCAATTCTCAACCTCAAGAACCTGAGAATCGCGTTTCGGATATGAATCAAACCGATTCGGTTCCCCCGCAACTACAATCTTCTGGTTCGGCGTCTATTCCTGTTGCAGCTAATCCTAACTTGAATCCTCCTTTGATATCTCCTCCTCAGCCTCCTCTGTCCTTTGCCCCTCCTCCGGCAGCACCGTCGTTTCGGCCTTTACCTCTTTCTACTCCACAGTTTCCATCCATTCTCAACCCTGGCTTTCCGAACGTGAACTATGCGAATCCAGGCATTCAACCGCCTGGTGTCAGTTCTGCGGCTCCTGGTGTGATAAGTGGCTCAGTTTCGGCTCCTCAGCAGATGATGCCTTATCAGGTTTTCCCTGGACAGGCTCCTAATCCGGCTTTGAGACCCTATGCACCTATTCCAAATGGTTACGCTACGATCCCGGCCGCAGTTCCTCAAGGAACTATGCCTCCCGCAGGTGTTCCTCGTTTTACTTCTCTGTACGCATCTGTGGTACGGGCTCCATTTCCTCCTCGACCACCTGGAGCAATTGGTATCATTCCAACGGTGTCACATCCTCTTCTTCCAGGTGTACCTGGCATACGCCCTATGATGCCTTTGGTGATGAGGCCTGTCATCCCTCCAAGTGTTACCCCTGCTGAGTTACCACAAACCACTATTTATATTGGCCGAATAGCTCAAACTGTGGAAAACGATTTCATGTTATCTCTTCTTCAGTTATGTGGACCTGTGAAGAGTTGGAAACGTGTCCAAGACCCCACAAATGGGACTCCTCGAGCATTTGGTTTTTGTGAGTTTGAGTCTGCCGAAGGCGTACTTCGTGCTATACGACTGCTTACCAATTTTAATGTAGATGGGCAAGAACTAAAGTTAAAAGGTACTCAAGCGACAAGAAAATATCTACGTCAATATGTCGAAAAGAAAATAGAAAACTCGAAAAAGCTGAAAGAAACTCAAGATGGAGAAGCAAAAGAAGAGGACGAAAGTGCAGTAGTTGTGGAGAAGAGTGATACTGTCAAATCTGTTGTAGAGGACTCAAAAGAAGATAATGATCCGGGGGAGAAAGAAGATCGTGAGATTGCCATTTCTGCAATTGTATCTAATGAGGACAAGGACGCTGATCAAGAGGCTTTGCAAAAGCTTACGAGTGCCATAGAGGAGAGGTTGAAGACCAGACCACTACCTCAGCCCCCTGCTCAAGCGGTTGATGATCCCTCTGGTAATGCAGATCCTTCTGCCAAGATGAGAGATGGAGACTCGGATGTTGATGTGACAAGAAGTGATGCGGTTGATGATAAAAATGATGCAGAAGACAGCAAACAAACAAGTGATCATGACAGGCCCGAGACAAGCTCTCCTGATAGAAGTAGGAGGTATGACTGGAGAAGCAGAGAAAGAGATAGAGAACGAGATGTAAAAAGGGAAAAGGAGCGAGAGATTGAGAGATATGAGAGAGAAACAGAGCGAGAACGTATTAGGAAAGAGAGAGAGCAAAGGAGAAAGATTGAGGAAGCTGAGCGTCAATATGAAGAATGCCTTAAAGAGTGGGAATATAGGGAAAGGGAAAGGGAGAAACAAAGGCAGTATGAAAGGGATAGGGAAAAAGAAAGGGACCGCAAAAGGAAGAAGGAGATAAAATATGATGAAGAAGATGAGGATGATGATTCGAGAAAAAAGTGGCGCAGGAGTGTGTTGGAGGAAAAGAGGAAAAAGAATCTTAGGGAAAAAGAAGATGATTTGGCTGACGCACAAAAAGAAGAGGAAGAAATTGTGGAGGCCATGAGAGCTGATGAAGAACAAAAGTGTAAACAACAAAGAGAAGCTTTAAAACTGCTGTCTGTGGAAGTTGATCATGATGATGTTAAAACTGTTCTTGCGGAAGAGTCTTCAGTAGAAATCAAAGATAAGGCTGTTGATCTGCACTTTGAAGGCGACTCCGTTTGTGAGAACCATATCGTTTTGCGCAATGGTGTAGGTTTTGAATCAACCTTGGTATCAGGTACTGCATCAGATCAACAGCATAGTGGTAATGGGCCTACAAGAAGGTTGGGATTCGGTCTAGTTGGATCAGGAAAGCGAACTGCTGTACCATCTGTTTTCCATGAAGAAGATGATGATGAAGCACATAAGGAGAAAAAGATGAGGCCCCTTGTACCAATAGATTACTCAGCCGAGGAACTGCAGGCTGTACAACCTCCCACTAGTGGAGTACAACCGCCAAACTTGGCTGCAGCAGCTGAGTTCGCAAAACGCATATCGAATGCTAATACCAAGGAAGAAAAGTCAAATGAAAAGGAAAGAGGCAGGCGTTCCAGTGATAAGCTCAGCTATCGGGATAAAGATCGTAATGATGAGGAAGTCCATCGCAAGAAAGATGAGAACAGGTATTCTGATAGAGAGAGGGATCGGGATCGTGTGTTGGATAAATTGAAGACACCTGATAACAAGAAACTTTTAGATGCCAAGCAATTAATTGATATGATCCCAAAGACTAAGGAAGAGCTGTTCTCATACGAAATAAATTGGGCCATTTATGACAAGGTAAAAGGTGTGTTAAGCTCGATAGTCAATTGCCACCTAATTTTGGTGCCTAATCAGATAATTTTGAAGCTAGCCAGCGTGGTGAACACACTTGTTTTGAAATGGGCCAAATTTGTTCAGGATGCACCAGAATTATGTGAATACTTGCTATGTGAGTCTATGCTGCAAATGGATGTTATAATTTTAATTGCCACTGATGTCTTGAAATTAGCATGTCTATTTGATGTGTTGTATATATTGGAAAGATTACACGAACTGCAGGAGCGAATGAGACCGTGGATATCAAAAAAGATCACTGAGTTTTTGGGGGAGGAAGAAGCAACACTGGTAGATTATATTGTTTCGAGCACTCAAGAACACGTGAAGGCATCACAAATGCTGGAGCTGCTGCAATCAATTTTGGATGAAGAAGCCGAAATGTTTGTTCTGAAGATGTGGAGGATGCTCATCTTTGAAATAAAGAAGGTGGAGACAGATGATGATTTCTTGGGTATTTACTGTGACCTGACTTTATGGTCATCCAACTTCCCTGACATTCTGTATGATGAATCAAACTTAGTTATCAGAATTGGTAGCAATGCTTATAAATCTGATAGAAAGACACAAAAGGCAATTCTGACGGATCGATATGATAAAGTTGCAATGTTTTACAAGTGGTCTGCCTCATGA 3249 43.67 MADSPSAATESNSQPQEPENRVSDMNQTDSVPPQLQSSGSASIPVAANPNLNPPLISPPQPPLSFAPPPAAPSFRPLPLSTPQFPSILNPGFPNVNYANPGIQPPGVSSAAPGVISGSVSAPQQMMPYQVFPGQAPNPALRPYAPIPNGYATIPAAVPQGTMPPAGVPRFTSLYASVVRAPFPPRPPGAIGIIPTVSHPLLPGVPGIRPMMPLVMRPVIPPSVTPAELPQTTIYIGRIAQTVENDFMLSLLQLCGPVKSWKRVQDPTNGTPRAFGFCEFESAEGVLRAIRLLTNFNVDGQELKLKGTQATRKYLRQYVEKKIENSKKLKETQDGEAKEEDESAVVVEKSDTVKSVVEDSKEDNDPGEKEDREIAISAIVSNEDKDADQEALQKLTSAIEERLKTRPLPQPPAQAVDDPSGNADPSAKMRDGDSDVDVTRSDAVDDKNDAEDSKQTSDHDRPETSSPDRSRRYDWRSRERDRERDVKREKEREIERYERETERERIRKEREQRRKIEEAERQYEECLKEWEYREREREKQRQYERDREKERDRKRKKEIKYDEEDEDDDSRKKWRRSVLEEKRKKNLREKEDDLADAQKEEEEIVEAMRADEEQKCKQQREALKLLSVEVDHDDVKTVLAEESSVEIKDKAVDLHFEGDSVCENHIVLRNGVGFESTLVSGTASDQQHSGNGPTRRLGFGLVGSGKRTAVPSVFHEEDDDEAHKEKKMRPLVPIDYSAEELQAVQPPTSGVQPPNLAAAAEFAKRISNANTKEEKSNEKERGRRSSDKLSYRDKDRNDEEVHRKKDENRYSDRERDRDRVLDKLKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAIYDKVKGVLSSIVNCHLILVPNQIILKLASVVNTLVLKWAKFVQDAPELCEYLLCESMLQMDVIILIATDVLKLACLFDVLYILERLHELQERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETDDDFLGIYCDLTLWSSNFPDILYDESNLVIRIGSNAYKSDRKTQKAILTDRYDKVAMFYKWSAS 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18794410 18800180 - BLOR03786 Blo11g00910 67110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00910 1082 MobiDBLite consensus disorder prediction 51 69 - -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 766 820 - -
Blo11g00910 1082 Coils Coil 479 528 - -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 1 47 - -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 328 400 - -
Blo11g00910 1082 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Blo11g00910 1082 CDD RRM_RBM25 231 314 IPR034268 -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 532 572 - -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 765 820 - -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 427 514 - -
Blo11g00910 1082 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 9 860 - -
Blo11g00910 1082 SMART pwi_2 942 1015 IPR002483 GO:0006397
Blo11g00910 1082 ProSiteProfiles PWI domain profile. 927 1025 IPR002483 GO:0006397
Blo11g00910 1082 MobiDBLite consensus disorder prediction 328 514 - -
Blo11g00910 1082 Coils Coil 579 628 - -
Blo11g00910 1082 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 9 860 - -
Blo11g00910 1082 MobiDBLite consensus disorder prediction 1 69 - -
Blo11g00910 1082 SUPERFAMILY RNA-binding domain, RBD 225 304 IPR035979 GO:0003676
Blo11g00910 1082 Pfam PWI domain 949 1012 IPR002483 GO:0006397
Blo11g00910 1082 SMART rrm1_1 232 305 IPR000504 GO:0003723
Blo11g00910 1082 Gene3D - 226 343 IPR012677 -
Blo11g00910 1082 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 944 1018 - -
Blo11g00910 1082 Coils Coil 532 566 - -
Blo11g00910 1082 SUPERFAMILY PWI domain 948 1014 IPR036483 GO:0006397
Blo11g00910 1082 MobiDBLite consensus disorder prediction 681 701 - -
Blo11g00910 1082 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 944 1018 - -
Blo11g00910 1082 Gene3D PWI domain 823 910 - -
Blo11g00910 1082 Gene3D PWI domain 923 1019 - -
Blo11g00910 1082 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00910 K12822 RBM25, S164; RNA-binding protein 25 - jre:109013698 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00910 Blo-Chr11:18794410 Blo18g00157 Blo-Chr18:1473519 6.65E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00910 Blo_Chr11 FPKM 27.913198 30.629557 38.338531 36.078903 18.121883 18.752655 17.498774 90.396172 91.008484 85.571548