Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00912 ATGCGGAAGATAGAGAAAAAGGAGCTGAATGAGGACGAGGATGAAAAAGTCGATATGGAGTCTACTGAGGTTGATAATCCGGCTAGCGAGGCTTGGTTGAAGAGGAATAGGAAGAGTCCATGGTCAGGAAAGAAGGAAGGCCTGCAAACGGAGGTCACTGAGGAGCAAAAGAAGTATGCTGAAGAGCACGCAAAGAAGAAAGGAGAAGAGAAAGGAGGAGAGAAGGCCGAGGTTATGGCTGATAAGAGTACGTTTCATGGTAAGGAGGAGAGGGATTATCAGGGTAGGTCATGGATTGCACCGCCAAAGGATGCAAAAGCTTCAAACGACCATTGTTATATACCAAAAAGATTGGTGCATACTTGGAGTGGGCACACAAAGGGCGTGTCTGCTATTAGGTTTTTCCCTAAACATGGACACTTAATTTTATCTGCTGGGATGGATACTAAGGTGAAGATTTGGGACGTGTTCAATTCGGGGAAATGTATGAGAACCTATATGGGTCATTCACAGGCAGTTCGAGATATTTCATTCTGTAACGATGGGACTAAGTTCTTAACTGCTGGTTATGATAAGAAGATAAAGTACTGGGATACAGAAACTGGCCATGTGATATCAACTTTCTCAACTGGAAAGGTTCCTTATGTCGTTAAGCTTAATCCTGACGATGATAAACAGAACATTCTTCTGGCTGGGACGAGTGATAAGAAGATTGTACAGTGGGATATGAATACTGGACAAATTACTCAAGAGTATGATCAACATTTGGGGGCAGTGAATACCATTACTTTTGTCGATAATAACAGGAGATTTGTTACTTCAAGCGATGATAAATCACTTCGTGTGTGGGAATTTGGAATTCCGGTTGTTATCAAGTATATTAGTGAACCTCACATGCATTCAATGCCTTCGATCACTTTACATCCCAATACAAATTGGCTTGCTGCTCAGAGTTTAGACAATCAAATCCTTATATATGGCACTAGGGAGAGATTTCAGTTAAATAAGAAAAAAAGATTTGCTGGTCATATTGCTGCAGGGTATGCGTGTCAGGTTAATTTTTCACCTGATGGTCGATTTGTAATGTCAGGTGATGGTGAAGGAAGGTGCTGGTTTTGGGACTGGAAGAGTTGTAAAGTTTTCAGAACTCTCAAGTGTCATAGCGGAGTTTGTATTGGATGTGAGTGGCATCCTTTGGAACAGAGTAAAGTAGCAACGTGCGGCTGGGATGGATTGATAAAATATTGGTGA 1251 41.73 MRKIEKKELNEDEDEKVDMESTEVDNPASEAWLKRNRKSPWSGKKEGLQTEVTEEQKKYAEEHAKKKGEEKGGEKAEVMADKSTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGTKFLTAGYDKKIKYWDTETGHVISTFSTGKVPYVVKLNPDDDKQNILLAGTSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSITLHPNTNWLAAQSLDNQILIYGTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGRCWFWDWKSCKVFRTLKCHSGVCIGCEWHPLEQSKVATCGWDGLIKYW 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18859564 18860814 - BLOR03788 Blo11g00912 67112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00912 416 Pfam WD domain, G-beta repeat 380 416 IPR001680 GO:0005515
Blo11g00912 416 Pfam WD domain, G-beta repeat 246 283 IPR001680 GO:0005515
Blo11g00912 416 Pfam WD domain, G-beta repeat 339 374 IPR001680 GO:0005515
Blo11g00912 416 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Blo11g00912 416 Pfam WD domain, G-beta repeat 160 198 IPR001680 GO:0005515
Blo11g00912 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 156 IPR001680 GO:0005515
Blo11g00912 416 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Blo11g00912 416 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Blo11g00912 416 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Blo11g00912 416 Gene3D - 102 416 IPR015943 GO:0005515
Blo11g00912 416 PANTHER PRE-MRNA-PROCESSING FACTOR 17 7 416 IPR032847 GO:0000398|GO:0071013
Blo11g00912 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 284 IPR001680 GO:0005515
Blo11g00912 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 156 - -
Blo11g00912 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 284 - -
Blo11g00912 416 MobiDBLite consensus disorder prediction 1 77 - -
Blo11g00912 416 CDD WD40 118 416 - -
Blo11g00912 416 ProSitePatterns Trp-Asp (WD) repeats signature. 142 156 IPR019775 -
Blo11g00912 416 MobiDBLite consensus disorder prediction 37 77 - -
Blo11g00912 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 202 - -
Blo11g00912 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Blo11g00912 416 Coils Coil 2 22 - -
Blo11g00912 416 SUPERFAMILY WD40 repeat-like 113 416 IPR036322 GO:0005515
Blo11g00912 416 SMART WD40_4 288 327 IPR001680 GO:0005515
Blo11g00912 416 SMART WD40_4 377 416 IPR001680 GO:0005515
Blo11g00912 416 SMART WD40_4 115 155 IPR001680 GO:0005515
Blo11g00912 416 SMART WD40_4 333 374 IPR001680 GO:0005515
Blo11g00912 416 SMART WD40_4 245 284 IPR001680 GO:0005515
Blo11g00912 416 SMART WD40_4 159 198 IPR001680 GO:0005515
Blo11g00912 416 SMART WD40_4 201 242 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00912 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - csv:101214854 783.097
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00874 Blo11g00912 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00929 Blo-Chr7:28416929 Blo11g00912 Blo-Chr11:18859564 4.58E-51 dispersed
Blo11g00912 Blo-Chr11:18859564 Blo16g00611 Blo-Chr16:24709245 3.11E-165 dispersed
Blo11g00484 Blo-Chr11:4434187 Blo11g00912 Blo-Chr11:18859564 8.44E-10 transposed
Blo19g00252 Blo-Chr19:14307296 Blo11g00912 Blo-Chr11:18859564 3.20E-07 transposed
Blo11g00912 Blo-Chr11:18859564 Blo06g00874 Blo-Chr6:32038772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00912 Blo_Chr11 FPKM 12.910398 12.207404 13.776696 13.723865 29.76885 24.940758 29.909573 13.291221 12.707884 13.201788