Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00914 ATGGCGTCCATTGATCCACCTGGTCCTGGGGCTGATCTCTTCTCGGATTCTTTGGAAGTCGTAATATTTATACTAGTGAGTGATTTGTTGGATATGGCGGATTCAAAACCAGGACTGAGAAAACCAGTGTTCACCAAGGTGGATCAGCTTCGTCCAGGAACAAACGGACACACACTGACAGTTAAGGTTGTTAGCACAAAAATGGTTTTGCAGAAGGGTCGTCCTGATGGTCCACAGCCCCGTCAAATGCGTCAAATGCACATTGCTGAATGCTTGGTTGGTGATGAGACTGGACTCATTATATTCACTGCTAAAAATGATCAAGTGGCCCTTGTGAAAGAGGGGAGCACTATTATCTTAAGAAATGCTAAGATTGATATGTTTAAAGGATCAATGAGACTTGCTGTGGATAAATGGGGACGAGTCGAAGTCGCCGACCCGGCAAGTTTTACTGTGAAAGAAGATAACAATCTATCACTCATCGAGTACGAACTAGTTAACGTTGTCGAAGAGTGA 516 43.99 MASIDPPGPGADLFSDSLEVVIFILVSDLLDMADSKPGLRKPVFTKVDQLRPGTNGHTLTVKVVSTKMVLQKGRPDGPQPRQMRQMHIAECLVGDETGLIIFTAKNDQVALVKEGSTIILRNAKIDMFKGSMRLAVDKWGRVEVADPASFTVKEDNNLSLIEYELVNVVEE 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18868270 18870338 - BLOR03790 Blo11g00914 67114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00914 171 SUPERFAMILY Nucleic acid-binding proteins 37 168 IPR012340 -
Blo11g00914 171 Gene3D - 54 160 IPR012340 -
Blo11g00914 171 CDD SoSSB_OBF 58 144 - -
Blo11g00914 171 PANTHER OS05G0244600 PROTEIN 32 170 - -
Blo11g00914 171 PANTHER BNAA07G09820D PROTEIN 32 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00914 - - - jcu:105644590 250.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00876 Blo11g00914 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00914 Blo-Chr11:18868270 Blo16g01158 Blo-Chr16:40104742 7.55E-74 dispersed
Blo11g00914 Blo-Chr11:18868270 Blo06g00876 Blo-Chr6:32050483 6.58E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001754 3 2 1 3 1 1 3 2 1 2 1 2 3 2 2 3 2 7 3 2 2 2 2 2 2 1 2 2 2 4 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00914 Blo_Chr11 FPKM 2.890433 3.540729 0.3182 0.467973 10.078658 9.914933 10.46663 0.0 0.0 0.0