Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00917 ATGGATGAAATTTACGGACTGGAATCGAAACCGGAATATTCGGATAAAGCGTTGATGTCGCCGGAGAATATCATATTACCGGTGGATTACCAAGGCTTGCTGGATTCCGGTGACTTCCGCGATAGGATTCCGGTGTTCGGATCCGATGACTTGCTTTCCGCGGCGTCGGCTCTATCGGAAGCTGAAGCTGCTTCCAATTCCCCCAAAATTCGACGGCAAGAAGATGCGAACACTTTGATCAAAGCTAAAATTGCATCTCATCCTTATTATCTTCGTTTGCTAGAGGCTTACATCGATTGCCAGAAGGTGGGGGCGCCGCCGGAGATAGCGACTGTGTTGGAGGACATCCGGCGAGAAAACGACTTTTCAAAGCTAGACTTTGCCTCCACGTGTGGGGAAGTCGATCCATCTCTTGACGAGTTTATGGAAACCTACTGTGAGATGTTGGTGAAGTATAAGTCAGATCTCGAAAGACCTTTCGGTGAAGCAACCTCATTCTTGAACGAGATTGAAGAACAGCTGAGCAATCTCTGCACTGGTCCATCGGTAAGAAGCATCTCCGCCCATTCAATTTTAACCATTCTTTGGTCATACTTGCGATGTCGACGGCTTATTCGGGGGGGGGGGGGGGGTCCAATGTTTCTGTTGTACACGTGTGATCGCTGTGTCTCCCATTTTTCACCCTGGAGTAGCGGTGAGGTTGAATATAACGTGGAACAAATGGAGGTTAAACGATTGAATGTTCTTTTCTCCGATGAAGGATTTTCATCATCAGATGATGAGTTGAGCGTAGGGAATGTAGAGTTCCAGGAAGCTCAAATCAGGGGAGACGGGAAGGACCTGAAAGAAAGGCTTTTCCGCCGGTTCGGCTGCCATATTAGTAACTTAAAACACGAGTTTTCAAAGAAGAAAAAGAAGGGAAAATTACCAAAGGAAGCTAAACAAGTACTTCTTGAATGGTGGAATGTTCACTACAAATGGCCTTATCCGACGGAAGCTGACAAAATTTCTCTGGCGGAGGCGACGGGATTAGATCCGAAACAGATAAACAACTGGTTCATTAATCAGCGGAAGCGGCACTGGAAACCTACGGAGGGTATGCGTTTTGAAGCGATGGAGAAACTTTCGGGGCAAATTCTTTACAGCTAA 1149 46.74 MDEIYGLESKPEYSDKALMSPENIILPVDYQGLLDSGDFRDRIPVFGSDDLLSAASALSEAEAASNSPKIRRQEDANTLIKAKIASHPYYLRLLEAYIDCQKVGAPPEIATVLEDIRRENDFSKLDFASTCGEVDPSLDEFMETYCEMLVKYKSDLERPFGEATSFLNEIEEQLSNLCTGPSVRSISAHSILTILWSYLRCRRLIRGGGGGPMFLLYTCDRCVSHFSPWSSGEVEYNVEQMEVKRLNVLFSDEGFSSSDDELSVGNVEFQEAQIRGDGKDLKERLFRRFGCHISNLKHEFSKKKKKGKLPKEAKQVLLEWWNVHYKWPYPTEADKISLAEATGLDPKQINNWFINQRKRHWKPTEGMRFEAMEKLSGQILYS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19138509 19144069 - BLOR03793 Blo11g00917 67117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00917 382 Pfam KNOX2 domain 134 178 IPR005541 GO:0003677|GO:0005634
Blo11g00917 382 ProSiteProfiles ELK domain profile. 280 300 IPR005539 GO:0003677
Blo11g00917 382 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Blo11g00917 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 379 - -
Blo11g00917 382 ProSiteProfiles 'Homeobox' domain profile. 300 363 IPR001356 GO:0003677
Blo11g00917 382 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 44 379 - -
Blo11g00917 382 SMART HOX_1 302 367 IPR001356 GO:0003677
Blo11g00917 382 ProSitePatterns 'Homeobox' domain signature. 338 361 IPR017970 GO:0000981|GO:0006355
Blo11g00917 382 SUPERFAMILY Homeodomain-like 301 369 IPR009057 -
Blo11g00917 382 CDD homeodomain 312 363 IPR001356 GO:0003677
Blo11g00917 382 Pfam Homeobox KN domain 320 359 IPR008422 GO:0003677|GO:0006355
Blo11g00917 382 Gene3D - 297 373 - -
Blo11g00917 382 Pfam ELK domain 280 301 IPR005539 GO:0003677
Blo11g00917 382 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Blo11g00917 382 SMART ELK_2 280 301 IPR005539 GO:0003677
Blo11g00917 382 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00917 Blo-Chr11:19138509 Blo16g01165 Blo-Chr16:40199397 2.93E-126 dispersed
Blo11g00917 Blo-Chr11:19138509 Blo01g01479 Blo-Chr1:54145214 5.26E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12958 PF03791 KNOX2 2.00E-22 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00917 - - csv:101211876 390.193