Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00919 ATGCCGATTCTAGCATCACTAACAGTAGTGAACCTCTTCTCCAACCTCCCCTCAACTACACCTCCGAATGAAGCAATTTCCTCCACTTCCTCTGCTCCTCCTCCCCCCATTCCTATTCCCAAATACCCTCCACCCAAACCCAAAATGCCTCCTCCTACAGCGGCGCCACCCAATCCCGTTATCAACACTTTCCACCGCCGAACAAAATACTTCAAACCGATTAAGGAAGGCGTCATCTCCTCCGACGGCGATCGTTCCGTCGTCGTCGGTGATTCCGGCGTATCGTATCTACTTCCAGGAGCTCCATTCGAGTTTCAATACAGCTACTCCGAGACGCCCAAGGTAAAGCCACTGGCGATTCGGGAGCCGGCTTTCTTGCCGTTTGCGCCTCCTACTATGGCGAGGCCTTGGACTGGTAATGCCCCATTGAAGAGCTCCAAAAAAAAGATTCCTCTTTTCGACTCGTTCAATCCGCCCCCACCCGGGTTGAAGGGAGTGAAGCACGTGGACATGCCAGGTCCATTTCCGTTTGGAAAGTATCCAAAGGAAGGGAATACTCGGGAGGAGATACTCGGGGAGCCACTGAAGAAATGGGAGGTTGAAATGCTCATAAAGCCGCTTTTATCTGATAATCGCCAAGTTAATCTGGGAAGGGATGGATTGACCCACAATATGTTGGAATTGATTCATTTCCACTGGAAGCGGGGGAGAGTTTGTAAAATTAAATGCAAAGGAGTTCCCACTGTTGATATGAGCAACATTTGCCGTTGCATTGAGTTTTATTTGCTGACAAAAAAAACTTTACCAATCTGGACTGAGACTCTCAAACATGCAATAATAGAGCTCAGCTTACAGTCTAGCCGTGTGCATAACTTGTTTGAATATGAATTGGTTCCTTGTGTGCTGTTATCTTTTGATGAAGAACAGATCCTACTGTGGAGGGGAAGAGATTGGAAATCAATGTTTCCACAGCCTACCTCACCTTCGTTTGTTCCAGAAGTTGTAGTCCCCCGTCGTATGGATGAAGCTGGTATGACAAAGGATGACAACTCAACAACAGACAGCGTAAACATTGCCCTTCCTTTCAAAAGTTCGAAAATGGTGTCGCTTTGGAAAAGAGCGATCTCCTCAAACAGAGCATTGTTACTCGACGAAAGACTCAGCCCCAACGAACTTTTGGATAAAGTGGAGGAATTTGAGGGTATTTTGCAGTCGACCGAGCTCTCTCATCCGGTCCAAATTTTATCATCTCGAGATAACACGAGCAGTTCACTGGCGGAGTTTGAGAATGATCGTGAAAAGGGAGATGACTGGGTGGAAGAAGAAGATGACATGTACAGCAGTGACGAGGATGAAGATGATGGAAGTGATCCATTTGTTAAAGGAGACTCATCATCAATTCCGATCGGATCATTGCCTATCGACAGAATAGCGAAAAAGCTTGGCCCTCCATCGAGAATTGATGTGTAA 1470 46.8 MPILASLTVVNLFSNLPSTTPPNEAISSTSSAPPPPIPIPKYPPPKPKMPPPTAAPPNPVINTFHRRTKYFKPIKEGVISSDGDRSVVVGDSGVSYLLPGAPFEFQYSYSETPKVKPLAIREPAFLPFAPPTMARPWTGNAPLKSSKKKIPLFDSFNPPPPGLKGVKHVDMPGPFPFGKYPKEGNTREEILGEPLKKWEVEMLIKPLLSDNRQVNLGRDGLTHNMLELIHFHWKRGRVCKIKCKGVPTVDMSNICRCIEFYLLTKKTLPIWTETLKHAIIELSLQSSRVHNLFEYELVPCVLLSFDEEQILLWRGRDWKSMFPQPTSPSFVPEVVVPRRMDEAGMTKDDNSTTDSVNIALPFKSSKMVSLWKRAISSNRALLLDERLSPNELLDKVEEFEGILQSTELSHPVQILSSRDNTSSSLAEFENDREKGDDWVEEEDDMYSSDEDEDDGSDPFVKGDSSSIPIGSLPIDRIAKKLGPPSRIDV 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19314395 19317972 - BLOR03795 Blo11g00919 67119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00919 489 Gene3D - 195 268 IPR035920 -
Blo11g00919 489 SUPERFAMILY YhbY-like 194 259 IPR035920 -
Blo11g00919 489 Pfam CRS1 / YhbY (CRM) domain 201 314 IPR001890 GO:0003723
Blo11g00919 489 MobiDBLite consensus disorder prediction 414 489 - -
Blo11g00919 489 ProSiteProfiles CRM domain profile. 193 325 IPR001890 GO:0003723
Blo11g00919 489 SMART CRS1_YhbY_2 195 314 IPR001890 GO:0003723
Blo11g00919 489 MobiDBLite consensus disorder prediction 434 457 - -
Blo11g00919 489 MobiDBLite consensus disorder prediction 18 58 - -
Blo11g00919 489 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 1 259 IPR044599 GO:0000373
Blo11g00919 489 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 296 481 IPR044599 GO:0000373
Blo11g00919 489 MobiDBLite consensus disorder prediction 28 58 - -
Blo11g00919 489 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 1 259 - -
Blo11g00919 489 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 296 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00919 - - - csv:101217796 364.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00919 Blo-Chr11:19314395 Blo16g01021 Blo-Chr16:38571319 1.86E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g677 . . . . . . Bma14g01799 Bma15g00177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00919 Blo_Chr11 FPKM 4.881434 6.154075 25.811247 26.494299 47.195686 42.077995 45.518272 12.64495 11.837733 12.579324