Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00963 ATGGTCATGTTTGGGGAGAAGGGTCTTTCTAATGGCCTTTCATCTGAGGCTGCTGAGCAGTCTCAGAGCAAGCTTTCTCGCCTAATTACTCAACGTAATAGGGATATCCATGCTGAAAAAATTGGGGTTTCTGAGAAAAACATGAGTCACAGGAGAGAATCTGATATGGTTGCTCATGGGTTTCCATTAAAACCCTTGAAAATCTCTCATTCAGGCTCTCAGGAGCTTACTCTCAGCTACCTTTGTGATAATTCCAAATCGGGTTTTCTCGAGAGAGATATTCCAGGTAGATATCCTTTAGAGAAAGTCAGCTACAAAGGCAAAGAAGTTGTCACTTCTGATAGTTTTAACGGAGATAACGCATGGGTAGAGAGGGATTTCCTGAATTTAAACGAGAAGAGAGAGAATTCGTCGAAACGAGAAGTTGCAGAAGATGTTGATAGAGGTAATAGAGAAAAGAGGTCAAAGCTCGAGACTCTTAATCTGTCACTAGCTTTGCCTGATCCTTCTCTTTCTCTCACTGCTTCGAACGCCCTGCAAAACGAAGATCTGGCAGCTCGATCCAAACCTACGAGGAGCTTGCAGTCTTTAGCCCCATCAAACAACAACACTAAAACCACATGTTCTAATGATTTTACTGGTGCTTCACTTTCTTACTCGTATTCCCATCCATTTTCCCACAATCCCAGTTGTTCTTTGACGCATAATTCAACTGAGCATTATGAGTGTTCGGTTGGTAGAGATGAGCAGATTTGGAATTGTGGAGAGGGGACAAATGGGTCTGTTCATAGTCGGTTTAAACCATTGGGAGATGGAGTCACTTTATCCAATCACGGCGGTAGTCTTTTCTCAATGATGCAGGGTAATCGTATGATGAACAAGGATTGCCATAATAATCATAATTTACCAACAAGTTCGGAGAACCATTCGTTTCTTCCTTCTGAACTGCCTGCTAGACTAAGGATTGAAACACCATCGGGGGATTCAAGAGGAAGGAATTCTCAGAATTTGGTAGGATTGGAGGGTGTAGATGCTGGGAGAGCAAGAAACCTTTCTAGACCTGAGAGAATTCTTCGTGAAATTGTTTTTGAATCAATACCTACTGTGAGTCAAACAATTCTAGAGCTGACAGCAGAAACACTCTCATTGACAAAGAATTACCTGAAGAATCTCATTGAGATGCCCGAAAATAGAGAGGAGTTAGTGGCCCTGCAACGGCAGCTTGAGCGAAGTTCAGATTTTACAAAGGAAACTCTCTTGAAATGCCAGAGAGAGCATCTGGAAATTTTGGTAGCTATAAAGATGGGACTTGGAAGCTTCATTAATGGAAAAACACGCACTTCCATTTCAGATCTTGCAGACATATTCCTGCTTCTGAGATGCAGAAACTGCCAAAATGTGGTCCCTGTGGATGACTGTGACTGCAAGATTTGCTCATCAAATAAAGGATTTTGCAGTTCATGCATGTGCCCTGTGTGCCTGAATTTCGATTGTGCAAATAACACCTGCAGTTGGGTCGGGTGCGATGTGTGCTCTCATTGGTGCCATGCAGCCTGTGGCATTCAGAAGAAATTCATAAGACCGGGACCAAGCTTGAAGGGAAAGACAGGAACGACGCAGATGCAATTTCACTGCATTGCCTGTGGTCATGCTTCGGAACTGTTTGGTTTTGTTAAGGATGTTTTCCTTTACTGTGCTAAGGACTGGGGGCATGAAACCTTGACCAAGGAACTTGAGTGTGTGAAAAATATTTTCAGGGGAAGTGAAGATCTTAAAGGCAAGGAACTGTTTTGTAAGGCTGAAGAGATGGTCTCTAAACTTAACACTAGAATCATTTCTGCTCAGGAAGCCTGCAAACTCATCATTCAGTTCTTTAACTATGTCCTATCAGATTTTCCGACCTCTCATGCTCCTCCAAAAGAGTTGCCAAGGGCAAAAACTAGCCTCGGGAAAAAAGAGAGTGCCCCATTCGTTCAATCGGCATCAAAATCATTGCCATATGCTTTTGAAAATATGAGATCTTGTAGCGGACAAAGCGATTTACTTTCAAATGATCATCACCATGGTGATCTCAAGGCCGACAAGCTTTCATTCAACACTTCATCAAAAATTGAAGGGCTCGATAGCCTTGAAAGCATAGTGCGGATCAAGGAAGCCGAGGCGAGAATGTTCCAAAACAAGGCGGATGATGCGAGAAGGGAGGGGGAAGGACTGCAACGAATAGTCATTGCAAAAACTCAAAAATTGGAGGAAGATTATGGGGAAAAGCTTGCTAAATTGTGTATGGAAACGACGGAGAGGAAGCGGAGGAAGAAAGTCGAGGAGCTGAAAGTGATAGAGAATTCTCATTTTGATTATTGCAATATGAAAAAGAGAATGCAAACTGAGATTACTGGTTTATTGCAGAGAATGGAGGCAACCAAGAAACAATTGATCTAA 2439 42.56 MVMFGEKGLSNGLSSEAAEQSQSKLSRLITQRNRDIHAEKIGVSEKNMSHRRESDMVAHGFPLKPLKISHSGSQELTLSYLCDNSKSGFLERDIPGRYPLEKVSYKGKEVVTSDSFNGDNAWVERDFLNLNEKRENSSKREVAEDVDRGNREKRSKLETLNLSLALPDPSLSLTASNALQNEDLAARSKPTRSLQSLAPSNNNTKTTCSNDFTGASLSYSYSHPFSHNPSCSLTHNSTEHYECSVGRDEQIWNCGEGTNGSVHSRFKPLGDGVTLSNHGGSLFSMMQGNRMMNKDCHNNHNLPTSSENHSFLPSELPARLRIETPSGDSRGRNSQNLVGLEGVDAGRARNLSRPERILREIVFESIPTVSQTILELTAETLSLTKNYLKNLIEMPENREELVALQRQLERSSDFTKETLLKCQREHLEILVAIKMGLGSFINGKTRTSISDLADIFLLLRCRNCQNVVPVDDCDCKICSSNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQKKFIRPGPSLKGKTGTTQMQFHCIACGHASELFGFVKDVFLYCAKDWGHETLTKELECVKNIFRGSEDLKGKELFCKAEEMVSKLNTRIISAQEACKLIIQFFNYVLSDFPTSHAPPKELPRAKTSLGKKESAPFVQSASKSLPYAFENMRSCSGQSDLLSNDHHHGDLKADKLSFNTSSKIEGLDSLESIVRIKEAEARMFQNKADDARREGEGLQRIVIAKTQKLEEDYGEKLAKLCMETTERKRRKKVEELKVIENSHFDYCNMKKRMQTEITGLLQRMEATKKQLI 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21537614 21540547 + BLOR03839 Blo11g00963 67163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00963 812 MobiDBLite consensus disorder prediction 1 24 - -
Blo11g00963 812 CDD PHD_OBE1_like 489 548 - -
Blo11g00963 812 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 3 811 IPR004082 -
Blo11g00963 812 MobiDBLite consensus disorder prediction 186 205 - -
Blo11g00963 812 Pfam Coiled-coil region of Oberon 690 801 IPR032535 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 411 426 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 496 516 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 708 728 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 747 769 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 452 473 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 569 588 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 372 394 IPR004082 -
Blo11g00963 812 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 426 441 IPR004082 -
Blo11g00963 812 Pfam PHD - plant homeodomain finger protein 462 582 IPR032881 -
Blo11g00963 812 Coils Coil 790 810 - -
Blo11g00963 812 Coils Coil 762 782 - -
Blo11g00963 812 PANTHER PROTEIN OBERON 3 3 811 - -
Blo11g00963 812 Coils Coil 714 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00963 - - - pper:18789922 1021.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00631 Blo-Chr4:5521943 Blo11g00963 Blo-Chr11:21537614 4.44E-89 dispersed
Blo06g00592 Blo-Chr6:28653497 Blo11g00963 Blo-Chr11:21537614 1.79E-116 dispersed
Blo06g01035 Blo-Chr6:33666253 Blo11g00963 Blo-Chr11:21537614 0 dispersed
Blo11g00963 Blo-Chr11:21537614 Blo13g00431 Blo-Chr13:24541081 1.13E-82 dispersed
Blo11g00963 Blo-Chr11:21537614 Blo05g00211 Blo-Chr5:2167156 5.09E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39