Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00972 ATGTACGGCGGCGACAACAAGCAAGCAAGCACTGGAGTGCCTATGAATTCGATACCTCCGGTTCCTGGGCAATATCCAAATGCACCTGGAGCTTGGTCAGTCGGTGCTTTTGATTGCTTCTCAGACATGTCAACTTGTTGCATCACATGCTGGTGCCCCTGCATCACTTTTGGGAAAATAGCAGAGATTGTAGATCGAGGATCGACATCATGTGGAGCAAGTGGAGCATTGTATACATTGATTGCCTGCGTGACTGGATGTGGATGGATATACTCTTGCCTTTATAGAGAGAAATTGAGGAGTCAGTATAACTTAGATGACGGCCCCTGTGGAGATTGTCTCCTTCATTGCTGCTGTGAGCCTTGTGCCTTGGTCCAAGAATATCGCGAGCTTCAGAACCGTGGATTCAACATGGCCCTTGGTATGGCTCTCCCTCCCCTTTCTCTTGGAATGATTCACTCCCTCTCTCCCCCCTTTCTCTCGGTATGA 489 48.88 MYGGDNKQASTGVPMNSIPPVPGQYPNAPGAWSVGAFDCFSDMSTCCITCWCPCITFGKIAEIVDRGSTSCGASGALYTLIACVTGCGWIYSCLYREKLRSQYNLDDGPCGDCLLHCCCEPCALVQEYRELQNRGFNMALGMALPPLSLGMIHSLSPPFLSV 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22770669 22771595 - BLOR03848 Blo11g00972 67172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00972 162 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 31 133 IPR006461 -
Blo11g00972 162 PANTHER PROTEIN PLANT CADMIUM RESISTANCE 1-RELATED 7 142 - -
Blo11g00972 162 PANTHER DUF614 FAMILY PROTEIN-RELATED 7 142 IPR006461 -
Blo11g00972 162 Pfam PLAC8 family 32 130 IPR006461 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00972 - - - gmx:100818949 199.904
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00874 Blo-Chr4:9758751 Blo11g00972 Blo-Chr11:22770669 4.86E-08 dispersed
Blo06g00967 Blo-Chr6:32948825 Blo11g00972 Blo-Chr11:22770669 5.83E-14 dispersed
Blo11g00972 Blo-Chr11:22770669 Blo12g00657 Blo-Chr12:24903375 3.59E-22 dispersed
Blo11g00972 Blo-Chr11:22770669 Blo01g00288 Blo-Chr1:3638144 4.39E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g475 . . . Bda11g00178 . . . . . . . . . . . . . Bhi07g00372 . . Lac13g1388 Hepe01g0561 . . . . . . . . . . . . . Lsi04g01114 . . . . Blo11g00972 . Bda11g00178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001588 3 2 1 2 1 1 1 1 0 2 1 1 3 3 3 3 0 6 3 1 2 1 1 2 2 3 2 2 1 13 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00972 Blo_Chr11 FPKM 21.951021 23.929766 23.260792 24.366688 22.605232 23.157549 22.405605 67.157036 67.247208 63.746479