Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00973 ATGGGTGTAGGGATTTTCCAAGTAGGGGAGCATGATGCAACAAGATTACTTGGACATGAGGGTGGACTGCAAGGGGAGCTCAAACACCTACATCATCTTTTACTCTGTTCACTTATCTTTGATCAATTGATTATTGTGAAGATGTCAGCTGCCAATGGAGTTAGGCGTGTTTGGATTGGTCAAAATGGATTGCTTTCCACTCCGGCTGTCTCAGCTGTAATACGTGAAAGGATTGGAATAGACGGATCCAGAGCATCAGGCGCATTTATTTTGACAGCAAGTCATAATCCAGGTGGTCCCCATGAGATGTTCGTCCCTGTTGTCTGTATGACAACAATAAAACTTTTGTTAAATGTGCAAGTTGTTCATGAAACCAAGGATTTTGGTATTAAATACAACATGGAAAATGGTGGGCCTGCTCCTGAGTCAATCACTGACAAGATATATGAGAATACAAAATCTATACGGGAGTACTTAATTGCTGATGATATGCCCGATGTGAATATCTCTGAAATTGGAGTTACAAATTTTGGTAGACCTGAGGGACAATTTGATGTGGAAGTGTTTGATTCAGCAAGTGATTATGTGAAGTTGATGAACTATATAGTTGCAAAAGGCCTTTTGTTCACCATGGTATTCTTCAGTTTATATTTGATGCCACTTGTTGTGGCTTGTTGGTCAATTTTTGATTTTGATGCTATTAACAAGTTGCTTTCCTCACCTAAATTTACATTCTGCTATGATGCTTTGCATGGAGTTGCGGGAGCTTATGCAAAACGTATTTTTGTTGAAGAGCTTGGCGCACAAGAAAGCTCATTACTGAACTGTGTACCCAAGGAGGATTTTGGGGGAGGGCATCCTGACCCCAATTTGACTTATGCGAAGGAATTGGTTGCTCGTATGGGTTTGAGTAAATCAAACTTTGAAGAGGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGTAACATGGTCCTCGGCAAAAGGTTTTTTGTCACCCCGTCTGATTCTGTTGCTATAATTGCTGCAAATGCTGTTGAAGCGATACCATATTTCTCGTCTGGCTTAAAAGGAGTTGCCAGGAGTATGCCAACTTCAGCTGCCTTAGATGTTGTGGCAAAACACTTAAATCTGAAGTTTTTTGAGGTGCCAACTGGATGGAAGTTTTTTGGCAACTTAATGGATGCAGGAATGTGTTCAGTTTGTGGAGAAGAGAGCTTTGGAACTGGATCTGATCATATACGAGAGAAAGATGGAATATGGGCAGTTTTGGCGTGGCTGTCAATACTTGCTTACAAAAATAAAGAAAACCTCGGAGGAGAAAAGCTTGTGACTGTTGAGGACATAGTGCGCCAGCATTGGAAAATCTATGGTCGCCACTACTACACCAGATATGACTATGAGAATGTTGATGCAGGAGGAGCTAAGGAACTGATGGCTAATTTGGTCCAATTGCAATCTTCCCTCTCCGTAGTTAATGAAATAATCAAGGAAATACGGTCAGATGTGTCCAATGTGGTCCATGCGGATGAATTTGAATACAAAGATCCTGTTGATGGTTCCATCTCAAAGCAACAGGGTGTTCGGTATTTGTTTGAGGACGGCTCGCGATTGGTTTTCAGGCTCTCGGGGACTGGCTCTGAGGGTGCGACCATTCGGCTCTACATTGAGCAGTATGAGAAGGATCCATCAAAAACTGGTAGAGATTCTCAAGATGCTCTTGCTCCACTGGTGGAAGTAGCCCTGAAACTTTCAAAGATGCAGGAATTCACTGGACGATCCGCCCCCACTGTGATTACATTGTTGCACCGGGATCCCGAGGTTGCCCAGTACAACAAGCCAAAGGGCAAGGAGTTGAATGTCATAGCCCGATTGATCCACCTGATCATGACTTACACGATTTTGCCTCGGGATGGGCATCGAGACCATGTTAGCTACATGGATCTCTATATGCTGGAGAAGGTGTTCACCAGGAAAAAGGTGGACATCGGATTTATCATCTTAAGCCACATGCATGAGGTGCTCAACAACTCAGCCAAGAACCTGCCATACAACTGGCTCATCCAGAGGATCGTTGAGCAGTATGGGGTACCTATCTAA 2109 43.43 MGVGIFQVGEHDATRLLGHEGGLQGELKHLHHLLLCSLIFDQLIIVKMSAANGVRRVWIGQNGLLSTPAVSAVIRERIGIDGSRASGAFILTASHNPGGPHEMFVPVVCMTTIKLLLNVQVVHETKDFGIKYNMENGGPAPESITDKIYENTKSIREYLIADDMPDVNISEIGVTNFGRPEGQFDVEVFDSASDYVKLMNYIVAKGLLFTMVFFSLYLMPLVVACWSIFDFDAINKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLSKSNFEEEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSSGLKGVARSMPTSAALDVVAKHLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKENLGGEKLVTVEDIVRQHWKIYGRHYYTRYDYENVDAGGAKELMANLVQLQSSLSVVNEIIKEIRSDVSNVVHADEFEYKDPVDGSISKQQGVRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVEVALKLSKMQEFTGRSAPTVITLLHRDPEVAQYNKPKGKELNVIARLIHLIMTYTILPRDGHRDHVSYMDLYMLEKVFTRKKVDIGFIILSHMHEVLNNSAKNLPYNWLIQRIVEQYGVPI 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22909796 22919903 + BLOR03849 Blo11g00973 67173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00973 702 SUPERFAMILY Phosphoglucomutase, C-terminal domain 462 603 IPR036900 GO:0016868|GO:0071704
Blo11g00973 702 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 44 85 IPR045244 GO:0004614|GO:0005975
Blo11g00973 702 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 226 603 IPR045244 GO:0004614|GO:0005975
Blo11g00973 702 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 124 203 IPR045244 GO:0004614|GO:0005975
Blo11g00973 702 Gene3D - 443 603 - -
Blo11g00973 702 Gene3D - 226 333 - -
Blo11g00973 702 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 45 158 IPR005844 GO:0005975|GO:0016868
Blo11g00973 702 Pfam Putative plant transposon protein 615 701 IPR046796 -
Blo11g00973 702 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 337 460 IPR005846 GO:0005975|GO:0016868
Blo11g00973 702 PANTHER BNAA09G30060D PROTEIN 226 603 - -
Blo11g00973 702 SUPERFAMILY Phosphoglucomutase, first 3 domains 321 467 IPR016055 GO:0005975|GO:0016868
Blo11g00973 702 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 235 329 IPR005845 GO:0005975
Blo11g00973 702 Gene3D - 122 203 - -
Blo11g00973 702 Gene3D - 39 104 - -
Blo11g00973 702 PANTHER BNAA09G30060D PROTEIN 44 85 - -
Blo11g00973 702 PANTHER BNAA09G30060D PROTEIN 124 203 - -
Blo11g00973 702 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 88 97 IPR016066 GO:0000287
Blo11g00973 702 Gene3D - 334 432 - -
Blo11g00973 702 SUPERFAMILY Phosphoglucomutase, first 3 domains 225 334 IPR016055 GO:0005975|GO:0016868
Blo11g00973 702 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 503 565 IPR005843 GO:0016868|GO:0071704
Blo11g00973 702 SUPERFAMILY Phosphoglucomutase, first 3 domains 44 203 IPR016055 GO:0005975|GO:0016868
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00973 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - jre:109003961 897.116
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g01007 Blo11g00973 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g01007 Blo-Chr6:33304778 Blo11g00973 Blo-Chr11:22909796 0 dispersed
Blo11g00973 Blo-Chr11:22909796 Blo13g00236 Blo-Chr13:10188624 5.54E-52 dispersed
Blo11g00973 Blo-Chr11:22909796 Blo06g01107 Blo-Chr6:34467292 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00973 Blo_Chr11 FPKM 5.561791 5.470586 5.555578 4.864797 2.713777 1.816417 4.034606 6.104201 5.888619 6.452052