Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00976 ATGGTTGAAGAAACCTCCGAATCTGGTAGTTTCTTGTGCTCGCTTTTGCATTTCAAGGTGGGCGCTATTGTCTCTTTTTCCGTAGCTTCATCTTTCGCTTTTGGATTCCGCCAAGAAGTCTGGAGACAGAATTTGACAATGGTTGCGAAGATGCTTTCAAAGAACAAGAAGAATCAGAATGCAAAGGGTAACTGCCTCTTGATCAGCATCAGTGTGATTGGGAGTTCGGGTCCAATTCGATTTATTGTCAATGAGGAAGATCTTGTGGCCTCTGTAATTGATACCGCACTCAAATCCTATGCACGAGAAGGGCGGCTTCCGATTCTCGGCTCAAATCTCGATGAATTTCTTCTGTATTGCTCAAATAGTGAATCAGATGCTTTGAATCCATTGGATAGAATTGGGTCTCAAGGAATTCGTAATTTCATGCTGTACAAGAAACCTCGAGAAGTGAAAGTGAATGAAGATGGAAAATCAATGGAAGCCACGACGAAAGTGAATGGCAGATGGAAATCATGGTTCCACAAATCCCTCAACCTGAAAATTTGTACCCAATGA 558 42.29 MVEETSESGSFLCSLLHFKVGAIVSFSVASSFAFGFRQEVWRQNLTMVAKMLSKNKKNQNAKGNCLLISISVIGSSGPIRFIVNEEDLVASVIDTALKSYAREGRLPILGSNLDEFLLYCSNSESDALNPLDRIGSQGIRNFMLYKKPREVKVNEDGKSMEATTKVNGRWKSWFHKSLNLKICTQ 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23222501 23223472 + BLOR03852 Blo11g00976 67176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00976 185 PANTHER BNAC05G50380D PROTEIN 50 181 - -
Blo11g00976 185 PANTHER BNAC05G50380D PROTEIN 50 181 IPR040358 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00976 - - - jre:108986543 178.333
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01308 Blo-Chr3:39435074 Blo11g00976 Blo-Chr11:23222501 1.37E-06 dispersed
Blo11g00976 Blo-Chr11:23222501 Blo16g00713 Blo-Chr16:27656813 1.25E-50 dispersed
Blo11g00976 Blo-Chr11:23222501 Blo01g00754 Blo-Chr1:10075392 1.30E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00976 . . . . . . . . Cmo15g00998 . . . Car15g00904 Cpe13g00365 . . . . . . . . . . . . . . . . . Chy09g00847 Cme09g01380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000783 5 3 3 7 4 3 3 3 3 1 3 3 3 2 3 4 3 3 4 3 3 3 2 1 2 3 3 4 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00976 Blo_Chr11 FPKM 75.133926 74.834015 46.103203 46.194542 48.042473 55.038124 53.443348 58.85527 61.409702 53.480465