Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00979 ATGGCTTCCCCCGTAACATCTTCTCCTTCTTTACAAACAAATTACAGAGAGATATTATCAAGCTTCCCAGTAACTCAACAATACAAAAAACCCAAACCCCATCTTTCATTTTCATTTCTTCTGCCATTGATGAAAGCTCCACTCCTGAAATCTTCAAGCACTGCGAGGTTCAATGAGGTCGTCATGAAGGAAGAAGAAGAGGATACGGGTAAAATTAGGAGGCTCCAAAATGGGTCTGACGTTAGAGGGGTGGCATTGGAAGGGGAAACGGGAAGAACGGTGGATCTTACTCCTCCAGCTGTGGAAGCCATAGCTGAGAGCTTTGGAGAGTGGGTTATAAAGGGGTTGGAAAAAGAGGACGGGCATTATGTTAGAAAAGTTAGGGTTTCGCTTGGAAAGGATCCAAGAATTTCGGGACCAAGTTTGAGTGTAGCCATTTTTGCAGGTCTTGTCCGTTCTGGTTGTTTGGTGTTTGATATGGGTCTTGCTACTACGCCTGCTTGTTTCATGAGTACAATACTTCCACCATTTGCTTTTGAAGCTTCGATAATGATGACAGCTTCTCATTTGGCATATACAAGGAATGGACTGAAGTTCTTCACAAAGAGAGGAGGGCTAGCGTCACCTGAGGTTGAGGAAATATGCGAGATTGCAGCACGAAAGTATGCCAATCGGATGACCAAAGGGTCAACTATGATGAAAGTTCTTCCCACCAAAGTTGATTTCATGAGCGTTTATGCAAACCATCTCAGAGAAATTATCAAAGAAAGGGTTAACCACCCTTTGCACTATGATACTCCTCTTCAAGGGTTTAAGATAATAGTGAATGCTGGAAATGGATCAGGAGGGTTCTTCACATGGAATGTCTTAGACAAGCTTGGTGCTGATACATTTGGCTCTCTCTACCTCAACCCGGACGGAATGTTTCCGAACCACATTCCAAACCCAGAGGACAAGACTGCCATGGCTGTCACCCAAGCCGCAGTTCTCAAAAACACAGCCGATCTTGGCATTGTTTTTGACACAGACGTTGACCGTAGTGGTGCAGTTGATAATAAAGGAAACCCCATTAATGGTGACAAACTCATAGCTCTTATGGCTGCAATTGTATTGAGAGAACAGCCTGGAACCACCATTGTCACCGACGCTCGAACAAGCATGGCTCTTAACAAGTTCATCACTGAAAGAGGCGGCCGGCATTGTTTGTATCGTGTCGGTTATAGAAATGTTATTGATAAAGGAGTTCAGTTGAATAACGATGGAGTGGAGACTCATCTCATGATGGAAACTTCAGGACATGGTGCTCTTAAAGAGAATTACTTCCTTGATGATGGGGCATACATGGTGGTAAAAATCATCATCGAAATGGTGAGAATGAGGCTAGCAGGGTCAGAAGAAGGGGTGGGGAGTCTAATAAAAGATTTAGAAGAACCATTGGAGGCAGTAGAACTAAGGATGAACGTCATCTCAGGACCTAGATTTGCAAAGGCAAAGGCGGTCGAGGCAATCGAAACATTCCGATACTACATCCAGGAAGGGAAACTCAAAGGATGGGAGTTAGATTCGTGTGGAGATTGTTGGGTTAGCGAAGGATGTCTTGTAGACTCAAACGACGATCCCGCAGCCGTTGATGCTCACATGTACAGAGCAAAAGTTTCAGACGAGCAGCATGGACAACATGGTTGGGTTCATCTTAGACAAAGCATACACAATCCTAATATTGCAGTTAACATTCAATCAACTGTCCCTGGGGGTTGTCAATCGATGACGAGAGTTCTTAGAGATAGGTTGTTTAGAGAATCCTCCAAATTTACTCTTGAGGAGGCAAATAAGAATCACTTTGGTTATTTCCTAAAAAATGGAGTCAAATCTGGAGTGAATTGA 1884 43.68 MASPVTSSPSLQTNYREILSSFPVTQQYKKPKPHLSFSFLLPLMKAPLLKSSSTARFNEVVMKEEEEDTGKIRRLQNGSDVRGVALEGETGRTVDLTPPAVEAIAESFGEWVIKGLEKEDGHYVRKVRVSLGKDPRISGPSLSVAIFAGLVRSGCLVFDMGLATTPACFMSTILPPFAFEASIMMTASHLAYTRNGLKFFTKRGGLASPEVEEICEIAARKYANRMTKGSTMMKVLPTKVDFMSVYANHLREIIKERVNHPLHYDTPLQGFKIIVNAGNGSGGFFTWNVLDKLGADTFGSLYLNPDGMFPNHIPNPEDKTAMAVTQAAVLKNTADLGIVFDTDVDRSGAVDNKGNPINGDKLIALMAAIVLREQPGTTIVTDARTSMALNKFITERGGRHCLYRVGYRNVIDKGVQLNNDGVETHLMMETSGHGALKENYFLDDGAYMVVKIIIEMVRMRLAGSEEGVGSLIKDLEEPLEAVELRMNVISGPRFAKAKAVEAIETFRYYIQEGKLKGWELDSCGDCWVSEGCLVDSNDDPAAVDAHMYRAKVSDEQHGQHGWVHLRQSIHNPNIAVNIQSTVPGGCQSMTRVLRDRLFRESSKFTLEEANKNHFGYFLKNGVKSGVN 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23577656 23588181 + BLOR03855 Blo11g00979 67179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00979 627 SUPERFAMILY Phosphoglucomutase, first 3 domains 245 356 IPR016055 GO:0005975|GO:0016868
Blo11g00979 627 PANTHER PHOSPHOHEXOSE MUTASE 28 602 - -
Blo11g00979 627 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 74 223 IPR005844 GO:0005975|GO:0016868
Blo11g00979 627 Gene3D - 272 348 - -
Blo11g00979 627 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 358 457 IPR005846 GO:0005975|GO:0016868
Blo11g00979 627 PRINTS Phosphoglucomutase/phosphomannomutase family signature 305 318 IPR005841 GO:0005975|GO:0016868
Blo11g00979 627 PRINTS Phosphoglucomutase/phosphomannomutase family signature 181 195 IPR005841 GO:0005975|GO:0016868
Blo11g00979 627 PRINTS Phosphoglucomutase/phosphomannomutase family signature 334 349 IPR005841 GO:0005975|GO:0016868
Blo11g00979 627 PRINTS Phosphoglucomutase/phosphomannomutase family signature 270 289 IPR005841 GO:0005975|GO:0016868
Blo11g00979 627 CDD PMM_PGM 75 595 - -
Blo11g00979 627 PANTHER OS06G0476200 PROTEIN 28 602 - -
Blo11g00979 627 SUPERFAMILY Phosphoglucomutase, first 3 domains 79 254 IPR016055 GO:0005975|GO:0016868
Blo11g00979 627 Gene3D - 351 474 - -
Blo11g00979 627 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 246 354 IPR005845 GO:0005975
Blo11g00979 627 SUPERFAMILY Phosphoglucomutase, first 3 domains 358 459 IPR016055 GO:0005975|GO:0016868
Blo11g00979 627 Gene3D - 76 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00979 - - - rcu:8262532 952.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00979 Blo-Chr11:23577656 Blo04g00319 Blo-Chr4:2531265 2.85E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g450 . . . . . . Bma14g01883 . . . . . . . Sed01g2847 . . Bhi07g00357 Tan04g1549 Cmetu10g0494 . Hepe01g0551 . . Cla07g00577 Cam07g0604 Cec07g0674 Cco07g0644 Clacu07g0608 Cmu07g0641 Cre07g0980 Cone13ag0751 . . . Lsi04g01125 . Chy10g00233 Cme10g01586 . Blo11g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009666 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00979 Blo_Chr11 FPKM 6.704806 4.63803 47.972748 47.978432 15.069292 17.790905 15.398705 10.539648 9.222077 8.410588