Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00981 ATGAAATGCTATCCGGCGAGCACTGGCCGACGATGGAATCTCACCTCGCGAGTGTCGTTTGGGAGAGGGAAACTCGAATGCTTTGAGCACACGAAGTCGGCCGAGGCAGGGACAATCAGTTTGGTGGTTCGCGTACTCCATCCAGTCACCTTCCGAGTTAAGGTTCAGCTCTGTTCGAGCATTTTGACCTCCGGCGACGACAGTAGCTCCAACCAGTGGCTTGGGCTCTCTGTTCTTTGGGTTATACCTGTATTGGATATTGGTTGTGTTTCCCTGTCACTTGTGAAGCCTTATCCTGTGAAATGGGTTACTCATCTGCAATTTGGTTATGGTGGAGGGTTATGCCCGGCTGTTGGAAGATTTTGGTTTCCTTTGCTGTTTGATGGGTTATTTATATGTTGTTGTTCTTGGAGATCAGATGCCTCCAGTTGCCTCGTATCTCTAGCTCATGGTACTCCTGTTGTTCTAATGGCAATCCAGGCAATAGCAAGCCACCCAAAACCACGTCGTTTCGCTTCTCCAAATACGAAAATCCAAAACACTGTACTAGAATACAGCATGGCCTATTTCTTCTTGGACCTTCTTCACTACGCACTTTTCCATCCATATGACGTGGTATTCATCTGCCACCATTTGGCCACCCTTTACGTGCTGACGACATGTCGTTTCTTGGTTTGTCATGGCGGGCTTGAAATTCTAGTCGTCCTTGTGTTGGCGGAGATGACAAGTGCTTGTCAGAACACGTGGAGCCTTGCTGGTTTCAGGAAAGCTGACGTGGAAGCAGCAAAGATTTTGTTCGATTTGTTGTCTCCTTATTTCTATGCATTCTACAGCGTGGTTAGAGGGATTTTAGGACCCATCTTCGTGCACAGAATGTGGGTGTATTATGGGAGTGGCGCGGCTGGCAACGAAATACCTGGGTGGGCAAGGGTTTCTTGGATGACAGTGATAGTAATGGCTATCTTATTTAGCATTCTTTGGGTTGCCAATCTCTGGAGGCATCTGTATGGAAGTCGACCTTCAAAAGACGCAAAGGCGAGGTGA 1044 47.8 MKCYPASTGRRWNLTSRVSFGRGKLECFEHTKSAEAGTISLVVRVLHPVTFRVKVQLCSSILTSGDDSSSNQWLGLSVLWVIPVLDIGCVSLSLVKPYPVKWVTHLQFGYGGGLCPAVGRFWFPLLFDGLFICCCSWRSDASSCLVSLAHGTPVVLMAIQAIASHPKPRRFASPNTKIQNTVLEYSMAYFFLDLLHYALFHPYDVVFICHHLATLYVLTTCRFLVCHGGLEILVVLVLAEMTSACQNTWSLAGFRKADVEAAKILFDLLSPYFYAFYSVVRGILGPIFVHRMWVYYGSGAAGNEIPGWARVSWMTVIVMAILFSILWVANLWRHLYGSRPSKDAKAR 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23772887 23779008 + BLOR03857 Blo11g00981 67181

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00981 347 ProSiteProfiles TLC domain profile. 136 340 IPR006634 GO:0016021
Blo11g00981 347 PANTHER TRAM, LAG1 AND CLN8 (TLC) LIPID-SENSING DOMAIN CONTAINING PROTEIN 137 343 - -
Blo11g00981 347 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 137 343 IPR040327 -
Blo11g00981 347 SMART lag1_27 136 340 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00981 - - - jre:109019496 268.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00671 Blo-Chr2:17991891 Blo11g00981 Blo-Chr11:23772887 2.44E-16 dispersed
Blo11g00981 Blo-Chr11:23772887 Blo18g00306 Blo-Chr18:3206185 4.93E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1165 . . . . . . Bma14g01881 . Cmo04g01912 . . . . . . . Cpe01g01601 . . . . . . . . . . . . . . . . . . Lsi04g00657 . . Cme10g00636 . Blo11g00981 . . . . . . . . . Cma04g01817 . Car04g01829 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004327 2 1 3 1 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00981 Blo_Chr11 FPKM 0.355509 0.145116 83.9105 81.783592 327.497131 314.341827 306.711578 4.103306 3.077076 2.904907