Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g00984 ATGGCAATAGGATTAGAGATCATCAACTTAGCGTTCTTCGTCGCATTGCTTTCCTGGGTTTTCCTCAAAACTTGGAAAAGAAACAGAACTACAGAAAATACCCATTTGAGAAATAGAGCTGGTAGAGAATTCAAATATCTTAGAACTATCGTTATTTTCTCCAACGCCATCATCTCATTTCTGTACCTAAGCTTTGCTTGTTATGAGTATTGGAAATACAGAATTCCAACGAGCAAATCAGTTGCTCCAGCACTTACCTGGCTATTTGCTACAGCGGTAGCTTTATATTCAGAAAATGGAAGTCTTTATGAAGAAGATAAAAGGTGGCCTTTAGTCCTTATTTTTTGGTGGGTTTTCTCAAGTTTCTACCTTTTAGCTTCTATCTGTGTTTACCTCTTAATCCACTGGGAATCCATTCGCTTCCCAAAATTTTTTCCACGCGCAAACATTGTAGATTTTGCCTCTTTCCCGCTATGCATTACTGTCTGCTTCGCTGCTTTCGCCATTGGCTATCCTAAGAAAAACAGTGAGATTGAACACCAACTGCTTCAGAAAGAGAGTAGTTTTTCTGAAGATAATTCTTTTACTAATGCTGGAATTTCGAGTAAACTTACATTTCAATGGCTAAATCCGCTTTTTCGGAGAGGAAGGACACAGAAGCTTGAACTATCTCATATTCCTTCTGTTCCTCAATCTGAAACTGCTGCAGATGCTTCTTTTGTTCTTGAAGAAAGTCTTCGTAGACAGAAAATGGAGGATTCCTCTTTGCCAAAAGCTCTCATCTATGCTATACGAAAATCCTTAGTCATAACTGCAATATTTGCGGGAACAAACACCATAGCAGCTTACATGGGTCCTTACTTGATCACAAACTTCGTTGATTACTTACTTGAAAAGAGTGATAATTCGAGCATTCGATATGGGTTGATTCTTGCTTTCATCTTCTTTTTTGCAAAGACAGTAGAGTCAGTTGCTCAAAGACAATGGTATTTGGGCACTCATCGTGTCGGTATAAGAATACGAGCAGCTCTTATGGTTCTAATCTACAAGAAATCTGTATCTATTAACTATGCTGGTTCGAGTAGCGGCAAAATTATTAATTTGATCAATGTTGATGTTGAAAGAATTGGAGACTTCTGCTGGTATGTCCATGAAATTTGGTTGCTTCCAGTGCAAGTTTTTCTCGCCCTCATTATACTTTACAGAAACTTAGGGGCTGCACCTTCCATTGTTGCTCTTTTTGCCACCATTTTTGTGATGGTCTGCAATACACCATTGGCTAATGTTCAAGAGAGGCTTCATTCAAAGATCATGGAAGCCAGAGACTCGAGAATAAAGCTGACTTCAGAGACTTTGAAGGGAATGAGAGTTTTGAAGCTTCATTCATGGGAATCCACATTCTTGAAGAAGGTACTGAAGTTAAGAGAGACTGAGAGAAGCTGGTTGAAGAGATATCTCTACACATGCTCAGCTGTTGCATTTCTCTTTTGGGTGTCGCCCACTTTGGTTTCAGTCATCACATTTGGGGCCTGCATTGTATTGAAAACACCATTAACAGCCGGTTCTGTTCTTTCTGCTCTGGCAACATTTCGGATTCTACAAGAACCAATCTACAACCTGCCTGAGCTGATATCCATGATTGCTCAAACAAAAGTTTCAATGGATCGAATTCAAGAGTTCGTTCGATTCGAAGAAGATCAAAAGAGGCTGATTCATTATCCGACTTCTAGAAAGTGTGATAGCATGATTGACGTGGAGGTAGGGGAATACTCTTGGGATACAAGTGATCTTAATCTAAAGAAACCTACTATAAAAATCAGTGAGAAGATGAAGCTAATGAAAGGCTGTAAAATTGCAGTTTGTGGATCCGTTGGTTCTGGAAAATCAAGCCTACTATGTAGCATACTTGGTGAGATTCCTCGGATTTCAGGGACGGTGATGAAGGTGTATGGAACCAAAGCATATGTTCCCCAAAGTGCTTGGATTCAATCAGGGACTATCAGAGATAACATTTTGTTTGGGAAGGAATTGAACAGGTTATTGTATGAAGATGTTTTAGAAGCTTGCGCTTTAAATCTAGATATAAAGATGTGGTTAAATGGTGATTTAACGCTCGTGGGCGAGAGAGGAATGAACTTAAGTGGAGGACAAAAACAGAGAATTCAACTGGCACGGGCCGTTTATAGTGATTCCGATGTTTACTTTCTCGACGATCCTTTTAGTGCTGTCGATGCACATACTGGATCGCATTTGTTCAAGGCAAGACGTCCTTTTATTTGTTTTTTTTTGCGGTGTCTAATGCAACTCTTATCCGGCAAGACCGTCATTTATGCGACGCATCAGTTGGAATTCATAGAAGCAGCTGACATGGTTCTTGTGATGAAAAACGGCCGGATTATTCAATCGGGGAAGTACAAGGACTTGGTCTCAGACTCCAAAAGTGAGCTGGCTGGACAAATTTCAGCGCATAAAAGTTCATTAAACCAAGTAAATTCATGTGAAGAAGTCGTATCAAGTTCTAGAAAGACCCGTCGTGCTTGTCAAATAGAAGTGGCTGATGAACGATTTGGAGAGCCTCTAAGAAATGGCAAGGTCCCGGGAAGAAGTGAGGAAGAGGAGACTCAGACGGGCCGAGTAAAGTGGAGTGTGTACTCCACCTTTGTCTCCTCGGCTTTCAAAGGAGCTCTTGTCCCAATTATTCTTCTATGCCAAATTATCTTTCAGGCACTTCAAATGGGCAGCAATTACTGGATTGCTTGGGCCACAGAGAAAGAGGGGAAGGTCAGCAGAGAGAGATTGATAGGAATATTTGTCCTCATGTCCGGTGGAAGCTCTGTCTTTATTTTGGGAAGAGCTCTTTTGCTAGCCACAATTGCCATTGAGACAGCTCAGTGTCTCTTCCTGGGAATGATCAAAGCTGTTTTCCAAGCACCCATTTCGTTCTTCGATTCCACGCCTTCAAGTCGAATACTCAACAGATCTTCGACAGATCAAAGCACAGTTGACACTGATATTCCATACCGACTAGCCGGATTGGCATTCGCTCTTATTCAGCTTTTGAGTATCATTATCCTCATGTCCCAAGTAGCCTGGCAAGTTTTCCTACTCTTCCTTGTCGTCATCGCCATCTCCCTATGGTATCAGGGATATTATATCACTACAGCAAGAGAGCTAGCCCGAATGGTTGGAATAAGGAAGGCGCCGATTATCCATCACTTCTCAGAATCAATCAGCGGAGCAACAACGATTCGCTGTTTCAACCAGGAAGATCGATTTTTGACAAAAATGATGAATTTGATCGACGACTACTCTCGTGTGGCCTTTCACAATTCTATGACAATGGAATGGCTTTGTCTACGGATCAATTTTCTGTTCAACGTCGTCTTTTTATTCGTTTTGATCATCTTGGTAACATTGCCAAGATCAGCCATTGATCCTAGTTTGGCAGGATTGGCGGCTACATATGGATTAAATTTGAATGTCCTCCAAGCATGGGTGATTTGGAACCTATGCAACGTCGAGAACAAAATGATATCGGTTGAGCGGATTCTTCAATTTACAAAATTGCCAACTGAGGCACCGCTAGTGATTGAAGATTGCAGGCCAAATCCCGACTGGCCAAACACTGGCAGAATAGAACTCGAAAATCTTCATGTCCAATATAATCCATCGCTCCCCATGGTTCTCAAGGGGATCACTTGCACATTTCCAGGAAATAAGAAAATTGGAGTTGTGGGGAGGACAGGAAGCGGAAAATCAACATTAATCCAAGCTCTTTTCAGGCTAGTTGAGCCATCTGAAGGACGGATTCTTATCGACGGAATCGATATTTGGAAATTGGGATTGCAGGATTTGAGGTCCAGATTAGGAATAATTCCCCAAGATCCAACCTTGTTTCAAGGAAGTATGAGAACAAATGTTGATCCTTTACAGCAGCATACCGACCACGAAATATGGGAGGTTCTCGATAAATGTCGGCTAGGTGAGATTGTTCGGACAGATCGAAGCCTTCTTGATGCATCAGTTGCTGAAGATGGGGAAAATTGGAGTGTTGGTCAGAGGCAGCTAGTTTGTTTGGCCAGAGTGCTCCTCAAGAAGAGAAGGATTATCGTATTAGACGAAGCCACAGCTTCGATTGATACAGCCATGGAAACTGTAATCCAAGAAACGATAAGAGAAGAGACGAATGGATGTACTGTCATCACGGTCGCTCATCGAATACACACAGTTATTGAAAATGACTTGATTTTGGTTCTGGATGAAGGTAAAATTGCGGAGTATGATTCCCCAGCTCGATTACTTGAGGACAAATCTTCGTCTTTTTCGAAGTTGGTCACTGAATGCTTGAGAAGATCGCCGAATAATGACTCGTATCGAGACCCCTCTTGTAGACGCGGAGAGATTACTTATTAA 4413 41.63 MAIGLEIINLAFFVALLSWVFLKTWKRNRTTENTHLRNRAGREFKYLRTIVIFSNAIISFLYLSFACYEYWKYRIPTSKSVAPALTWLFATAVALYSENGSLYEEDKRWPLVLIFWWVFSSFYLLASICVYLLIHWESIRFPKFFPRANIVDFASFPLCITVCFAAFAIGYPKKNSEIEHQLLQKESSFSEDNSFTNAGISSKLTFQWLNPLFRRGRTQKLELSHIPSVPQSETAADASFVLEESLRRQKMEDSSLPKALIYAIRKSLVITAIFAGTNTIAAYMGPYLITNFVDYLLEKSDNSSIRYGLILAFIFFFAKTVESVAQRQWYLGTHRVGIRIRAALMVLIYKKSVSINYAGSSSGKIINLINVDVERIGDFCWYVHEIWLLPVQVFLALIILYRNLGAAPSIVALFATIFVMVCNTPLANVQERLHSKIMEARDSRIKLTSETLKGMRVLKLHSWESTFLKKVLKLRETERSWLKRYLYTCSAVAFLFWVSPTLVSVITFGACIVLKTPLTAGSVLSALATFRILQEPIYNLPELISMIAQTKVSMDRIQEFVRFEEDQKRLIHYPTSRKCDSMIDVEVGEYSWDTSDLNLKKPTIKISEKMKLMKGCKIAVCGSVGSGKSSLLCSILGEIPRISGTVMKVYGTKAYVPQSAWIQSGTIRDNILFGKELNRLLYEDVLEACALNLDIKMWLNGDLTLVGERGMNLSGGQKQRIQLARAVYSDSDVYFLDDPFSAVDAHTGSHLFKARRPFICFFLRCLMQLLSGKTVIYATHQLEFIEAADMVLVMKNGRIIQSGKYKDLVSDSKSELAGQISAHKSSLNQVNSCEEVVSSSRKTRRACQIEVADERFGEPLRNGKVPGRSEEEETQTGRVKWSVYSTFVSSAFKGALVPIILLCQIIFQALQMGSNYWIAWATEKEGKVSRERLIGIFVLMSGGSSVFILGRALLLATIAIETAQCLFLGMIKAVFQAPISFFDSTPSSRILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSIIILMSQVAWQVFLLFLVVIAISLWYQGYYITTARELARMVGIRKAPIIHHFSESISGATTIRCFNQEDRFLTKMMNLIDDYSRVAFHNSMTMEWLCLRINFLFNVVFLFVLIILVTLPRSAIDPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKLPTEAPLVIEDCRPNPDWPNTGRIELENLHVQYNPSLPMVLKGITCTFPGNKKIGVVGRTGSGKSTLIQALFRLVEPSEGRILIDGIDIWKLGLQDLRSRLGIIPQDPTLFQGSMRTNVDPLQQHTDHEIWEVLDKCRLGEIVRTDRSLLDASVAEDGENWSVGQRQLVCLARVLLKKRRIIVLDEATASIDTAMETVIQETIREETNGCTVITVAHRIHTVIENDLILVLDEGKIAEYDSPARLLEDKSSSFSKLVTECLRRSPNNDSYRDPSCRRGEITY 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24140665 24145919 - BLOR03860 Blo11g00984 67184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g00984 1470 Pfam ABC transporter 1229 1377 IPR003439 GO:0005524
Blo11g00984 1470 SUPERFAMILY ABC transporter transmembrane region 261 565 IPR036640 GO:0005524|GO:0016021
Blo11g00984 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1205 1438 IPR027417 -
Blo11g00984 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 269 549 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo11g00984 1470 Pfam ABC transporter 610 740 IPR003439 GO:0005524
Blo11g00984 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 585 821 IPR003439 GO:0005524
Blo11g00984 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1212 1446 IPR003439 GO:0005524
Blo11g00984 1470 CDD ABCC_MRP_domain2 1210 1430 - -
Blo11g00984 1470 CDD ABCC_MRP_domain1 583 798 - -
Blo11g00984 1470 Gene3D - 1195 1448 IPR027417 -
Blo11g00984 1470 Gene3D - 577 846 IPR027417 -
Blo11g00984 1470 Pfam ABC transporter transmembrane region 899 1139 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo11g00984 1470 Pfam ABC transporter transmembrane region 270 536 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo11g00984 1470 Gene3D ABC transporter type 1, transmembrane domain 863 1193 IPR036640 GO:0005524|GO:0016021
Blo11g00984 1470 Gene3D ABC transporter type 1, transmembrane domain 257 567 IPR036640 GO:0005524|GO:0016021
Blo11g00984 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 899 1175 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Blo11g00984 1470 SUPERFAMILY ABC transporter transmembrane region 898 1192 IPR036640 GO:0005524|GO:0016021
Blo11g00984 1470 CDD ABC_6TM_ABCC_D2 897 1187 IPR044726 GO:0140359
Blo11g00984 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 110 1452 - -
Blo11g00984 1470 CDD ABC_6TM_ABCC_D1 270 557 IPR044746 GO:0140359
Blo11g00984 1470 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524
Blo11g00984 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 811 IPR027417 -
Blo11g00984 1470 PANTHER OS01G0902100 PROTEIN 110 1452 - -
Blo11g00984 1470 SMART AAA_5 614 798 IPR003593 -
Blo11g00984 1470 SMART AAA_5 1238 1425 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g00984 - - - mcha:111019797 2104.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00821 Blo11g00984 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00509 Blo-Chr10:11396008 Blo11g00984 Blo-Chr11:24140665 9.45E-14 dispersed
Blo02g00260 Blo-Chr2:2498092 Blo11g00984 Blo-Chr11:24140665 0 transposed
Blo03g01469 Blo-Chr3:41326466 Blo11g00984 Blo-Chr11:24140665 0 transposed
Blo05g00062 Blo-Chr5:596566 Blo11g00984 Blo-Chr11:24140665 0 transposed
Blo05g00463 Blo-Chr5:6904302 Blo11g00984 Blo-Chr11:24140665 0 transposed
Blo09g00046 Blo-Chr9:728929 Blo11g00984 Blo-Chr11:24140665 0 transposed
Blo10g00056 Blo-Chr10:554622 Blo11g00984 Blo-Chr11:24140665 0 transposed
Blo11g00984 Blo-Chr11:24140665 Blo06g00821 Blo-Chr6:31467470 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g00984 Blo_Chr11 FPKM 4.969683 6.342825 4.588884 4.765031 10.398163 11.171777 10.467842 7.062175 6.53611 7.117041