Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g01001 ATGTGGCAGAATCTGGCCCCGAAGCCTTCTTTCATCAAAACTCTTGAAGCTGACGTTCATCATGCTAACAGCTTAGCAGCATCTCTCCCGAGTGATTGCAGAGGGAAATGCATTCAGATGAAATTGAATTACAGTCCCTTTGCTCCTCTTTTTATGCATTTGATAGAATGGATGAATTTCAGCTGTACGGATGCTCTCCCCAGCTTTTTAGGCCTTCTTAATGTACTCGTCTTCAAGGTTCATGTTGGTGGAATGCCATCTGTTTCATCGAAAGGGAGGAAAGCAACCATAAGAGAGTTTTATGCTGTCATCTACCCTTCACTTAGGCAACTTGAAGGAGAGGTTATTGAGATGGAAAGCTCTAAAAAAAGACGCCAATTTACGGATATTTTGAAGGAAAAGAGAGTAGAAGAAGCACAAAGGAAGCTTTCCAGTGAAATTCTTGAAAGAGAGGAGGAATGCGGAATATGCTTGGAAATCCGAACAAAAATTGTACTGCCGAATTGTGGCCATTCCATGTGTATTGCCTGCTTCCAACACTGGAATGCAAGATCTCAGTCTTGCCCGTTCTGCAGGGGCAGCCTAAAGCGAATAACCTCGGGAGATCTATGGATTCTCCCTACTACTTCTGATGTAGTGGATACAGACACTATTGTAAAGCAGAATCTATTGCATTTCTACCTCTATATCGAGAATCTCCCTCTTCGTATGCCAGAGACACGTGTTTGCACGCACGCTTTCATGCTCTGA 750 43.33 MWQNLAPKPSFIKTLEADVHHANSLAASLPSDCRGKCIQMKLNYSPFAPLFMHLIEWMNFSCTDALPSFLGLLNVLVFKVHVGGMPSVSSKGRKATIREFYAVIYPSLRQLEGEVIEMESSKKRRQFTDILKEKRVEEAQRKLSSEILEREEECGICLEIRTKIVLPNCGHSMCIACFQHWNARSQSCPFCRGSLKRITSGDLWILPTTSDVVDTDTIVKQNLLHFYLYIENLPLRMPETRVCTHAFML 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25199172 25201034 + BLOR03877 Blo11g01001 67201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g01001 249 Pfam Zinc finger, C3HC4 type (RING finger) 151 197 - -
Blo11g01001 249 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 12 249 - -
Blo11g01001 249 ProSiteProfiles Zinc finger RING-type profile. 154 192 IPR001841 -
Blo11g01001 249 PANTHER RING FINGER PROTEIN 41, 151 12 249 - -
Blo11g01001 249 SMART ring_2 154 191 IPR001841 -
Blo11g01001 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 201 IPR013083 -
Blo11g01001 249 SUPERFAMILY RING/U-box 142 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g01001 - - - peu:105138042 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g01001 Blo-Chr11:25199172 Blo06g00817 Blo-Chr6:31411546 1.10E-65 dispersed
Blo11g01001 Blo-Chr11:25199172 Blo08g00200 Blo-Chr8:2290332 3.94E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1070 . . . . . . . . Cmo04g01062 . Cma04g00986 . Car04g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g01001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01194 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g01001 Blo_Chr11 FPKM 99.077698 96.926918 1.743222 2.286118 0.714387 0.0 0.0 1.821916 2.064949 0.0