Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g01008 ATGGAGACCCAGTTCCATCATAATCTTTTCGAGAGGCGCTCTCTTTTGAAATCCAAGGTTCCTGCTGTCAAATGGCTCAAGGAATGGGTGCCCCAAGATGTTGTAGCAACTGGAGGAAAGTGCTCTCTTTTGAAATGGGTCAGAGAGGATACGTTGAAGGCCTTAACAGAGAAGGCAAACCAACCAGAGGCACCTGATCCAGAACCAGAACCAACGACTGAAGTGCTTTTCTTTTGCAGCTATGATGGCTGCGGTAAGACATTTATTGATGCTGGTGCTTTGAGAAAGCATTCTCACATCCATGGAGAGAGGCAATACGTTTGTCATTATGACGGATGCGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAACGACATTTTCTTATCCATACAGGAGAAAGAGATTTTGTGTGCCCTCATGAAGGCTGCGGTAAGGCATTCTCCCTGGATTTCAACTTAAGGTCGCACATGAAAACACACTCGCAAGAAAACTACCACATCTGCCCTTACCAGGATTGTGGAAAGAGATTTGCTCATGAATACAAGCTAAAGAACCACATTGCATCTCACCATGAAAAGAATGTAAGCGCGGAATTGCCAAAATTTACACCACATTTGGAGAAGCAAACCAAGGTTTCAAAGGCCCCTGCTGCAGCATACGGATCTGCGTCTTCGGATCGTCCTTATGCTTGTCCATATGAAGGTTGCGAAAAGGCATACATACATGAATACAAGCTCAAACTCCATCTGAGGAGAGAGCATCCAGGTCACATGTACGATGAAAATGCAGATAATGGCATATCGAATGCTGATAATGACATGGACGAAGCGAGTGACCCCGATGGGTTTGGAGGAAAACGTGTCAACAGCAAAAGCCAGAAACAGAGCAGTAGACCGAAACCAAGCCAGAAGTTGCCTCAGGCAAAAGTTTCCAAGCGAAAGGCTTCAACTCTGGCTTCTGCTCCTCAAGAGCATGCACTTAAAAAACCATGGCCGTCCAGAGAAGAAGCTTATGAGGAGGATAGCGAAGAAACAGAGGAGGACCGGGACGAGGATGGATGGAGATTCGATAACAACCAAGATGAAGATGAAGAAGAAACAGAATATGAAGAT 1113 45.1 METQFHHNLFERRSLLKSKVPAVKWLKEWVPQDVVATGGKCSLLKWVREDTLKALTEKANQPEAPDPEPEPTTEVLFFCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYQDCGKRFAHEYKLKNHIASHHEKNVSAELPKFTPHLEKQTKVSKAPAAAYGSASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHMYDENADNGISNADNDMDEASDPDGFGGKRVNSKSQKQSSRPKPSQKLPQAKVSKRKASTLASAPQEHALKKPWPSREEAYEEDSEETEEDRDEDGWRFDNNQDEDEEETEYED 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25988249 25991586 - BLOR03884 Blo11g01008 67208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g01008 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Blo11g01008 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Blo11g01008 371 MobiDBLite consensus disorder prediction 257 371 - -
Blo11g01008 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Blo11g01008 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Blo11g01008 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Blo11g01008 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Blo11g01008 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Blo11g01008 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Blo11g01008 371 Gene3D Classic Zinc Finger 103 133 - -
Blo11g01008 371 Gene3D Classic Zinc Finger 163 195 - -
Blo11g01008 371 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Blo11g01008 371 MobiDBLite consensus disorder prediction 207 227 - -
Blo11g01008 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Blo11g01008 371 MobiDBLite consensus disorder prediction 288 318 - -
Blo11g01008 371 PANTHER BNAA03G13270D PROTEIN 3 370 - -
Blo11g01008 371 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Blo11g01008 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Blo11g01008 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Blo11g01008 371 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Blo11g01008 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Blo11g01008 371 SMART c2h2final6 136 160 IPR013087 -
Blo11g01008 371 SMART c2h2final6 166 190 IPR013087 -
Blo11g01008 371 SMART c2h2final6 229 254 IPR013087 -
Blo11g01008 371 SMART c2h2final6 77 101 IPR013087 -
Blo11g01008 371 SMART c2h2final6 106 130 IPR013087 -
Blo11g01008 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 3 370 - -
Blo11g01008 371 Gene3D Classic Zinc Finger 203 269 - -
Blo11g01008 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Blo11g01008 371 Gene3D Classic Zinc Finger 77 102 - -
Blo11g01008 371 Gene3D Classic Zinc Finger 134 161 - -
Blo11g01008 371 MobiDBLite consensus disorder prediction 337 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g01008 Blo-Chr11:25988249 Blo15g00228 Blo-Chr15:2371472 1.39E-09 dispersed
Blo11g01008 Blo-Chr11:25988249 Blo04g00391 Blo-Chr4:3165045 7.47E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
12961 PF00096 zf-C2H2 0.0029 CL0361 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g01008 - - zju:107412546 563.918