Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g01031 ATGGACGCCACAACTAGCAGCACTCCAACTATCCAATTCTATAACATTCCCGATCAGTCTATTACGGCCATTGCCCCCTCGTCACTACCAGCTTTTCATCGTCACCAACGGCATTGCTCAGGGGATTCCACCCCTGGTGAATTCCCCTTGGCTGCTAATCCTTCTATCGTCCTTCATGTCCTTACGACATGCAGTTTGGACCCTAATGACCTCGCAAAACTAGAGGCAAGTTTTCTTGCAACATGTTCGTTTTTTAGACAATCGGCCAATTTCGCCCCCCATTTTGAATTGTCGATATCCGAGCTGGCTGCATTGGATATGTGCCAAAATAGGGCTATATTTAAGCCGATGACACATGAAGAGCGTTTATATTTGAGGGAAAGATGTGGGGGTTCTTGGAAATTAGTCTTGAGGTTCTTGCTCGCCGGGGAAGTGTGTAGCCGGAGGGAGAAATCTCAGGCAATTGCCGGAGCTGGTCATAGCATTGCAGTAACATCAAAGGGAACTGTTTACTCATTCGGGTCTAACACCTCTGGCCAGCTTGGACATGGCGAAATCGAAGAGGAATGGCGACCCCGACCAATCAGAGCTCTACAAGGGATTAGAATCATCCAAGCAGCTGCAGGATCTGGGAGGACGATGCTAATTAGTGATGAAGGGCGGGTTTATGCGTTTGGCAAGGACACGTTTGGCGAAGCCGAGTATGGAGCGCAAGGAGCTAAGCTTGTTGCCACACCTCAACCGATTGAGTCCTTGAGAAAAATATTTGTCGTTCAAGCTGCAATCGGAAATTTCTTCACTGCTGTATTGTCTAGGGAAGGGAGGATTTACACATTTTCTTGGGGTAGTGATAGCATTCTCGGCCACCAAACTGAACCAAATGATGTAGAGCCGCGCCCTTTATTAGGGGCACTTGAAAACATCCCGGTTGTACAAATTGCGGCTGGGTACTGCTACCTTCTTGCCCTTGCCTGTCAACCAAGTGGCATGTCAGTGTACTCAGTTGGATGTGGATTGGGTGGGAAGCTCGGACACGGATCCAGAACTGATGAAAAGTACCCAAAATTGATTGAACAGTTTAACCTCTTGAAGCTCCAGCCAATGGTCGTGGCTGCCGGCGCATGGCATGCAGCAGTGGTGGGGTGTGACGGTCGGGTGTGCACGTGGGGGTGGGGTCGTTACGGATGTTTGGGCCATGGAAACGAAGAGTGTGAGTCCGTCCCCAAAGTGGTAGAATCATTAAGCAACGTAAAAGCAGTCCACATAGCAACGGGTGACTACACTACATTTGTCGTCTCTGACACTGGCGACGTTTACTCATTTGGCTGTGGAGAATCCGCCAGCCTCGGCCATAACATCATCGCAGCTGACGTACAGGGTAATCGCCATGCAAATGTTCTAAGCCCAGAGCTTGTGACCTCATTGAAGCAAATCAACGAGAAAGTGATGCAAATAAGTCTGACCAACTCAATTTACTGGAATGCGCACACGTTTGCACTTGCGGAATCAGGAAAGCTGTATGCATTTGGGGCGGGAGATAAGGGTCAGCTGGGAGTGGAGCTCAGTGAGCATCAAACCGAGAGAGAGAGACCGGAGCAGGTGGATATTGACCTAAGC 1617 49.47 MDATTSSTPTIQFYNIPDQSITAIAPSSLPAFHRHQRHCSGDSTPGEFPLAANPSIVLHVLTTCSLDPNDLAKLEASFLATCSFFRQSANFAPHFELSISELAALDMCQNRAIFKPMTHEERLYLRERCGGSWKLVLRFLLAGEVCSRREKSQAIAGAGHSIAVTSKGTVYSFGSNTSGQLGHGEIEEEWRPRPIRALQGIRIIQAAAGSGRTMLISDEGRVYAFGKDTFGEAEYGAQGAKLVATPQPIESLRKIFVVQAAIGNFFTAVLSREGRIYTFSWGSDSILGHQTEPNDVEPRPLLGALENIPVVQIAAGYCYLLALACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPKLIEQFNLLKLQPMVVAAGAWHAAVVGCDGRVCTWGWGRYGCLGHGNEECESVPKVVESLSNVKAVHIATGDYTTFVVSDTGDVYSFGCGESASLGHNIIAADVQGNRHANVLSPELVTSLKQINEKVMQISLTNSIYWNAHTFALAESGKLYAFGAGDKGQLGVELSEHQTERERPEQVDIDLS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27380020 27382166 + BLOR03907 Blo11g01031 67231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 503 IPR000408 -
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 431 452 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 276 290 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 151 164 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 170 186 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 373 391 IPR000408 -
Blo11g01031 539 PRINTS Chromosome condensation regulator RCC1 signature 220 236 IPR000408 -
Blo11g01031 539 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 539 - -
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 383 IPR000408 -
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 168 219 IPR000408 -
Blo11g01031 539 SUPERFAMILY RCC1/BLIP-II 152 452 IPR009091 -
Blo11g01031 539 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 539 - -
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 326 IPR000408 -
Blo11g01031 539 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Blo11g01031 539 Pfam Regulator of chromosome condensation (RCC1) repeat 219 270 IPR000408 -
Blo11g01031 539 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Blo11g01031 539 Pfam Regulator of chromosome condensation (RCC1) repeat 167 216 IPR000408 -
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 220 273 IPR000408 -
Blo11g01031 539 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 539 IPR000408 -
Blo11g01031 539 Gene3D - 327 538 IPR009091 -
Blo11g01031 539 Gene3D - 147 326 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g01031 - - - tcc:18609639 905.205
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo11g01031 Blo16g01178 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01540 Blo-Chr3:42879122 Blo11g01031 Blo-Chr11:27380020 2.49E-14 dispersed
Blo11g01031 Blo-Chr11:27380020 Blo16g01178 Blo-Chr16:40329350 0 dispersed
Blo11g01031 Blo-Chr11:27380020 Blo05g00521 Blo-Chr5:9551003 2.08E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g341 . . . Bda11g00126 . . . . Cmo04g01567 . . Cma18g01004 Car04g01549 Car18g00926 . Cpe09g00316 Cpe01g01333 Bhi07g01298 . . . . . . . . . . . . . Cone13ag0812 Cone19ag0818 . . Lsi04g00237 Csa05g02631 Chy10g01166 Cme10g00239 . Blo11g01031 Bda07g01454 Bda11g00126 . . Bma01g00415 Bma06g01049 . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g01031 Blo_Chr11 FPKM 2.577161 4.23867 0.0 3.882354 2.614973 0.0 1.471833 2.355159 2.32171 2.880869