Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g01032 ATGGAGCCCGCAAGCTGCGTGAGCCTTTGCTTCTCATCGCCGCGAGACGAGACGACAACCTCGTCGTCTCCTGCTCGGTCTCTATCAGACGAGACGACGACTTCGTCGTCTCCACTCTCCAGTGGAACTGCAGACTCTCCACTGGACCAGAGAGGTTCGACGATGCCCGACGAGCAGAGGCAAGACAGATCCAGAGACGTCCTACGGGTGACGATGCCCTCTTTAGATCTCGCGTCGAAGCTCGTAGTCCAGACTCTAGCGTCAAAGGAGGAGGTCGGAGGCAGAGGGTCGTCGTCTTATCTCGGTCTCGCCTCTCGCATCGTCTCGCGTCGTCTTGCTCTCCCACTCCCGGCTCGCAGAAGAGACCGAGGGGAGCTTCGTCGCCTTCGTCATTTGAGATCCTCAACGCTCATCAAGTTCAAGAATCGCATTCGATTATCTTGTGTTGGAGAGTGGAGGTGGTTTGCTCGTGCAGAAATGGCGCTCGCATTCGATGAGTTTGGTAGGCGATTCATTATAATCAAAGAGCAAGAGCAGAAGACTCGATTGAGAGGTCTCGATGCTCAAAAGGCCAACATTTCCGCTGGTAAAGCTGTTGCTCGCATCCTTAGGACTTCGCTTGGCCCGAAAGGAATGGACATGATGCTACAGAACCCCGACGGCGACGTCACTATTACCAATGATGGAGCAACAATTTTGGAACAAATGGACGTTGACAATCAAATTGCCAAGTTGATGGTTGAGCTATCGCGCAGTCAGGATTATGAAATCGGTGATGGGACAACAGGTGTTGTTGTAATGGCTGGGGCATTATTAGAACAGGCGGAACGTCTGTTAGAACGTGGCATCCATCCCATTAGAGTTGCAGAAGGCTATGAACTGGCATCTGGAATTGCTGTTGAGAACCTTGAACATATAGCTCAAATTTTGAGCCTCTTTGTGAACCGATGCAAGCGTGATTTGGCCGAGATATCAGTTAAAGCAGTTCTTGCTGTTGCTGATTTAGAGAGAAAGGATGTTAATTTAGACTTGATAAAAGTAGAGGGCAAAGTTGGGGGAAAATTGGAAGATACTGAGCTTATATATGGTATCGTTGTAGACAAAGATATGAGTCATCCTCAGATGCCAAAGAAAATTGAAGACGCAAAGATAGCTATCTTGACTTGCCCCTTTGAGCCTCCTAAGCCAAAGACAAAACATAAGGTTGATATTGACACAGTTGAGAAATTCCAGACTTTGCGTCAGCAAGAGCAGAAGTATTTTGATGACATGGTTCAGAAATGCAAGGATGTTGGTGCTACCTTGGTAATCTGCCAATGGGGTTTTGATGATGAGGCAAATCATCTGTTGATGCACCAAAACTTGCCTGCTGTGAGATGGGTTGGTGGTGTAGAGTTGGAGCTGATAGCTATAGCTACAGGTGGAAGAATTGTCCCTAGGTTCCAGGAATTGACTCCAGAAAAGCTTGGAAAGGCATGCTTTATATTTCGAGAAAAAGCATTTGGTACTACAAAAGATCGAATGTTATACATTGAACACTGCCGTGTTAACATGTGCTATTGGTATCTAATGGCGTATTTTACAAAACGCAGTATCCATGATGCTTTATGTGTGGCAAGGAATCTTATTCGCAACAACTCAATAGTGTATGGTGGTGGATCTGCTGAAATTTCCTGCTCGATTGCTGTAGAGGCAGCCTCAGATAGATATCGTGGAGTTGAACAGTATGCTATTAGAGCTTTTGCTGATGCTTTGGATTCAGTTCCGATGGCACTAGCAGAGAATAGCGGTCTCCAACCGATTGAAACTCTTTCTGCAGTGAAAGCTCAACAGATTAAGGAGAATAACGCGCACTGCGGAATTGATTGCAATGATGTTGGGACGACTGACATGCGAGAGTAG 1902 46.79 MEPASCVSLCFSSPRDETTTSSSPARSLSDETTTSSSPLSSGTADSPLDQRGSTMPDEQRQDRSRDVLRVTMPSLDLASKLVVQTLASKEEVGGRGSSSYLGLASRIVSRRLALPLPARRRDRGELRRLRHLRSSTLIKFKNRIRLSCVGEWRWFARAEMALAFDEFGRRFIIIKEQEQKTRLRGLDAQKANISAGKAVARILRTSLGPKGMDMMLQNPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRVAEGYELASGIAVENLEHIAQILSLFVNRCKRDLAEISVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKKIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHQNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKACFIFREKAFGTTKDRMLYIEHCRVNMCYWYLMAYFTKRSIHDALCVARNLIRNNSIVYGGGSAEISCSIAVEAASDRYRGVEQYAIRAFADALDSVPMALAENSGLQPIETLSAVKAQQIKENNAHCGIDCNDVGTTDMRE 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27382642 27387294 - BLOR03908 Blo11g01032 67232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g01032 633 Gene3D - 524 633 IPR027413 -
Blo11g01032 633 ProSitePatterns Chaperonins TCP-1 signature 2. 225 241 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Blo11g01032 633 PANTHER CHAPERONIN 164 633 IPR017998 GO:0140662
Blo11g01032 633 SUPERFAMILY GroEL-intermediate domain like 310 546 IPR027410 -
Blo11g01032 633 Gene3D - 170 335 IPR027413 -
Blo11g01032 633 MobiDBLite consensus disorder prediction 11 54 - -
Blo11g01032 633 SUPERFAMILY GroEL apical domain-like 357 516 IPR027409 -
Blo11g01032 633 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 162 633 IPR012718 GO:0005524|GO:0006457|GO:0051082
Blo11g01032 633 Pfam TCP-1/cpn60 chaperonin family 199 631 IPR002423 GO:0005524
Blo11g01032 633 PRINTS Tailless complex polypeptide 1 (chaperone) signature 253 272 IPR017998 GO:0140662
Blo11g01032 633 PRINTS Tailless complex polypeptide 1 (chaperone) signature 201 217 IPR017998 GO:0140662
Blo11g01032 633 PRINTS Tailless complex polypeptide 1 (chaperone) signature 223 241 IPR017998 GO:0140662
Blo11g01032 633 PRINTS Tailless complex polypeptide 1 (chaperone) signature 548 560 IPR017998 GO:0140662
Blo11g01032 633 SUPERFAMILY GroEL equatorial domain-like 180 633 IPR027413 -
Blo11g01032 633 PANTHER BNAA08G19100D PROTEIN 164 633 - -
Blo11g01032 633 ProSitePatterns Chaperonins TCP-1 signature 3. 253 261 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Blo11g01032 633 Gene3D GroEL 363 516 IPR027409 -
Blo11g01032 633 CDD TCP1_epsilon 165 633 IPR012718 GO:0005524|GO:0006457|GO:0051082
Blo11g01032 633 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g01032 K09497 CCT5; T-complex protein 1 subunit epsilon - jre:108990809 815.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo06g00834 Blo11g01032 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00834 Blo-Chr6:31576443 Blo11g01032 Blo-Chr11:27382642 0 dispersed
Blo11g01032 Blo-Chr11:27382642 Blo03g01411 Blo-Chr3:40684448 2.54E-51 dispersed
Blo11g01032 Blo-Chr11:27382642 Blo16g00127 Blo-Chr16:2888286 1.15E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g592 . . . . . Bpe10g00853 Bma14g01835 Bma15g00232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00834 Blo11g01032 Bda07g01650 . . . . . . . . . Cma05g00055 . Car05g00043 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004994 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 0 1 1 1 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g01032 Blo_Chr11 FPKM 1.392479 1.410779 20.941093 20.772392 2.071779 2.222781 1.695414 7.136334 9.037863 7.91041