Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo11g01042 ATGAAACAAAAGTTGGAGACTTCCTCAATATCGGAAGAAGAACTCTCCTCGTTATCATCCCATGTGGCTTTGAACGTTTTCTTCTTTGAGACTTTGGATTTCTTCTTTGCTTTGGGACATTCGGTTGAAAAAACTATGCTACTCCAGCAATCATCATGGGAGAATAATGTGAGAATGAGCAATCTCGTGGAGCAAATTCGTGGTCCTCTTTCTAGCATCCGGACTTTGAGTAAGATGTTATCCATTCACATGAAAAGGAGTGAGATTGCACATGATGTTGTAGAAGACATAATGGTACAAGGCGATCGTATTAAAGATACCCTTGAAGAACTACAAGATGCTGCTAATATAGTGCGCTATAATCAAGAAACATTAAAGAAAATGCATAGTCCCATTGGTCCATATCCTGAATCAGTTAGGAGTCAGTTGAAAAACTTTTCTGTGGATGGGTCATGCATGGTGCAAGAACAAGGAGAACCACTTGCTCTAAATGCAGCAGATACGGATTTAGAAATGTCTATGCCACCTATGGCCATTGCTCCTCTGCGGCAACACGGAATTAGACCGTGCAATGTATCTGATGTGGTGGGAGATTTGGTTGGAGCAATTAGACCTTTGGCCCTTAAACAGCGACGTGGCATAGAACTAAATGAAATATCTCATTCTTCGTCAGTCGCTATAGAAGAACCTGCCCTGCGCCAGGCTCTAAGCAATTTAATCGAGGGCGCACTGCTGCGTACACGTGTTGGTGGAAAAGTTGAAATTTTGTCTACTGGAGCACCAGCAGGTGGTAGTCTTGTTTTTATTGATGATGATGGCCCTGATATGCATTACATGACACAGATGCACTCCCTCACCCCATTTGGAGCTGACCTCTCATCCGCAGATATGGTCGAAGACAATATGACGTGGAATTTTGTTGCTGGGTTGACTGTTGCCCGTGAGATACTTGAGAGTTACGGCTGTGTTGTTCGTGTCATATCACCCAGAATCGCTGATGCTGCCATTGGAACAGATTTTCAAACTAAGAAAACTCTTGGAAATGCTAAATCGAAGTATTTGTATCTTACTTTTGTGCTAATTTCGAACGGTAAAAAAACCAACGAGTCCATGAGGCTTATAGTCACAACTTTTCTGGGAGTAGTTTTTGGCTTCTTTATTGGAATATCCTTCCCAACACTATCATTGACAAAGTTGAATCTCCCTTCCAATATTTTCCCAAATGCTGATCTCACGTATGTTGACGACAAAAGATCAGGCCTTGCCATGCAAACCGTTCAAAATGCTTCATCATCTGTGAGGAGTGCGAACAGAAACTCAAATGAACCAGAGACTTCGAATAACACATCAAAGATTTGGGTCCCTTCAAATCCTAAAGGTGCAGAAAGATTGCCACCAGGAATTGTTGTGGATACGTCAGACTTCTACTTGCGTCGATTGTGGGGTAATCCTAGTGAGGATTTAACAATCAAGCCAAAGTATCTCGTGACCTTCACTGTTGGCTACAATCAGAAAGAAAATATTAATAGAGCAGTGAAAAAGTTTTCAGAGAACTTCACAATTCTTTTGTTTCATTATGATGGTCGGACAACTGAATGGGACGAATTTGAATGGTCAAAACAAGCCATTCATATTAGTGTTGGGAAGCAAAGTAAATGGTGGTATGCTAAGCGATTTTTGCATCCTAACGTTGTGGCACCATATGACTACATATTTATCTGGGATGAAGACCTTGGAGTGGAACATTTTAATGCAGAAGAGTATATAAAACTAGTAAGGAAACATTCCTTAGAGATTTCACAGCCCGGTTTAGATCCTAGTAGAGGGACAACATGGCAGATGACAAAGCGGAGAGGTGATCATGAAGTTCACAAAGTAACTGAGGAAAAACCAGGATGGTGCTCTGATCCTCATCTGCCTCCCTGTGCTGCGTTTGTCGAAATCATGGCTCCAGTGTTTTCTCGAGATGCTTGGCGATGTGTGTGGCACTTGATCCAGAATGACCTTATCCATGGGTGGGGTCTTGATTTTGCCCTCAGAAGATGTGTAGACCCTGCATATGAGAAAATAGGAGTCGTAGATGCTCAGTGGATTGTCCACCAAGCTATTCCCTCACTTGGAAGTCAGGGAGAATCGAAAGATGGGAAGAGACCATGGCTAGGGCGTTTTTCTTGCCTTTCTATACCGGAAGTACAGAATGAAATAATGAGGAAAGTTAATATTGCAGGTGAGAGAGAGGTGTCGGAAGGAGTGGACGATGTTTCAAAGCCGGCTGGCAAGGGCGGAGACTGCATATTTCAGGGAACAAGGAATAGATCTTCCAGTTTCAACTAA 2334 42.5 MKQKLETSSISEEELSSLSSHVALNVFFFETLDFFFALGHSVEKTMLLQQSSWENNVRMSNLVEQIRGPLSSIRTLSKMLSIHMKRSEIAHDVVEDIMVQGDRIKDTLEELQDAANIVRYNQETLKKMHSPIGPYPESVRSQLKNFSVDGSCMVQEQGEPLALNAADTDLEMSMPPMAIAPLRQHGIRPCNVSDVVGDLVGAIRPLALKQRRGIELNEISHSSSVAIEEPALRQALSNLIEGALLRTRVGGKVEILSTGAPAGGSLVFIDDDGPDMHYMTQMHSLTPFGADLSSADMVEDNMTWNFVAGLTVAREILESYGCVVRVISPRIADAAIGTDFQTKKTLGNAKSKYLYLTFVLISNGKKTNESMRLIVTTFLGVVFGFFIGISFPTLSLTKLNLPSNIFPNADLTYVDDKRSGLAMQTVQNASSSVRSANRNSNEPETSNNTSKIWVPSNPKGAERLPPGIVVDTSDFYLRRLWGNPSEDLTIKPKYLVTFTVGYNQKENINRAVKKFSENFTILLFHYDGRTTEWDEFEWSKQAIHISVGKQSKWWYAKRFLHPNVVAPYDYIFIWDEDLGVEHFNAEEYIKLVRKHSLEISQPGLDPSRGTTWQMTKRRGDHEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSRDAWRCVWHLIQNDLIHGWGLDFALRRCVDPAYEKIGVVDAQWIVHQAIPSLGSQGESKDGKRPWLGRFSCLSIPEVQNEIMRKVNIAGEREVSEGVDDVSKPAGKGGDCIFQGTRNRSSSFN 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28263270 28273163 + BLOR03918 Blo11g01042 67242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo11g01042 777 PANTHER OS06G0731900 PROTEIN 363 721 IPR007877 -
Blo11g01042 777 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 186 328 IPR036890 -
Blo11g01042 777 MobiDBLite consensus disorder prediction 428 459 - -
Blo11g01042 777 MobiDBLite consensus disorder prediction 750 777 - -
Blo11g01042 777 MobiDBLite consensus disorder prediction 428 455 - -
Blo11g01042 777 Pfam Protein of unknown function (DUF707) 456 719 IPR007877 -
Blo11g01042 777 CDD HisKA 59 115 IPR003661 GO:0000155|GO:0007165
Blo11g01042 777 Gene3D - 178 333 IPR036890 -
Blo11g01042 777 PANTHER LYSINE KETOGLUTARATE REDUCTASE TRANS-SPLICING PROTEIN 363 721 - -
Blo11g01042 777 CDD HATPase 232 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo11g01042 - - - zju:107428509 610.527
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00383 Blo-Chr1:4374573 Blo11g01042 Blo-Chr11:28263270 6.80E-178 dispersed
Blo10g00435 Blo-Chr10:7972055 Blo11g01042 Blo-Chr11:28263270 0 dispersed
Blo11g01042 Blo-Chr11:28263270 Blo14g00183 Blo-Chr14:1446522 4.89E-179 dispersed
Blo11g01042 Blo-Chr11:28263270 Blo06g00847 Blo-Chr6:31702321 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g635 . . . . . . Bma14g01824 . . . . . . . Sed04g0579 . Cpe01g01573 Bhi07g01797 Tan04g0157 Cmetu10g0954 . Hepe10g1586 . . Cla05g02592 Cam05g2783 Cec05g2820 Cco05g2854 Clacu05g2785 Cmu05g2633 Cre05g2749 Cone13ag1082 Cone19ag1070 . . Lsi04g00601 Csa05g02282 Chy10g00848 Cme10g00582 . Blo11g01042 . . . . . . . . . Cma04g01776 . Car04g01801 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000341 6 5 4 6 6 4 7 3 4 4 4 4 6 3 3 7 4 6 5 4 4 4 4 3 3 3 4 8 3 3 134
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo11g01042 Blo_Chr11 FPKM 54.968727 53.326061 52.222134 50.287918 51.690453 66.882889 53.186729 37.052849 37.051514 39.571754