Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00011 ATGAAGAACTACACTCACGGACAGCTACTCCATCGCACCCAGCTTCACGCTTCAACTCACAGTAGCTTCATGGATTGGCCTTGTATGTCCCTCGTCATTGAAGAATGTCCCTTGGACGTCCTTAGAGGCACCATTGGTCATGTGGCACATGGCAAGTCAACAGTTGTTAAAGCAATATCTGGTGTTCAGACAGTTCGTTTTAAAAATGAGCTGGAGCGAAACATCACCATCAAGCTTGGATATGCAAATGCAAAGATATACAAATGCGAAGATGATCAATGCCCTCGACCTATGACCTACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGGTTTGAAAACTGCAGGATGGAACTTCTAAGACACGTGTCTTTTGTAGATTGTCCTGGTCACGATATTCTCATGGCTACCATGCTTAATGGAGCGGCAATTATGGATGGGGCACTTCTTTTAATAGCTGCAAATGAAAGTTGTCCACAACCTCAAACTTCAGAGCACCTGGCTGCAGTTGAAATTATGCGCCTCCAACATATTATAATCCTTCAAAATAAAGTAGATCTTATTCAGGAAAATGTAGCCGTCAATCAACATGAAGCAATTAAAAAATTTATTAAAGGGACTGTAGCTGATAATGCACCTATTGTTCCAATTTCAGCGCAGCTGAAGTATAACATTGACGTTGTGTGTGAATATATAGTGAAGAATATTCCCATTCCAGAGCGAAACTTTGTGTCACCTCCTAACATGATTGTAATTCGTTCATTTGATGTCAATAAGCCTGGATTCGAGGTTGATGAAATCAAAGGTGGCGTAGCTGGTGGAAGTATTCTTAGGGGTGTTTTGAAGGTGAACCAATATATTGAAGTCCGTCCTGGAATTGTTGTTAAGGATGAAAGTGGGAATATCAAGTGCACACCAATATATTCTAGAATTGTTTCTTTGTATGCTGAACAAAATGAGCTGCAATTTGCCGTGCCAGGTGGCCTCATTGGGGTTGGCACAACCATGGATCCCACCTTGACACGTGCTGATAGATTGGTAGGCCAGGTTCTTGGCGAGGTTGGATCGCTCCCTGAGGTTTTTGTTGAGTTGGAGTTGCTGCTTTTAGTTTTTGCAGATTTAAGAGGTGATGATCCTTTTAGTTTTTGCATGTTCTTCTTGCTATATCCTTTCTCTGGTAGCAACATTCTTCACCGCACTCTGGTTCTATATATAGCTGCTTACGATTTGAACATCACTGTCTTTGTTAATTTCTTCCTGCTGCGACGGCTGTTGGGTGTGAGAACAAAGGGCTCAGAAAGGCAAGGTAAGGTTTCCAAGCTAACTAAAGGTGAGATCCTAATGTTAAACATAGGATCTATGTCCACTGGAGCCCGAGTCCTTGCAGTGAAGAATGATCTAGCAAAGCTGCAACTCACTTCTCCGGTTTGTACAAGCAAAGGTGAAAAAATAGCGCTAAGTCGACGAGTTGAGAAGCACTGGCGTCTTATTGGCTGGGGCCAGATTCAAGCAGGTACTACTCTTGAAGTTCCACCTTCCCCCATTTGA 1566 42.85 MKNYTHGQLLHRTQLHASTHSSFMDWPCMSLVIEECPLDVLRGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDQCPRPMTYKAYGSGKEDSPLCDVPGFENCRMELLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAVNQHEAIKKFIKGTVADNAPIVPISAQLKYNIDVVCEYIVKNIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQYIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELELLLLVFADLRGDDPFSFCMFFLLYPFSGSNILHRTLVLYIAAYDLNITVFVNFFLLRRLLGVRTKGSERQGKVSKLTKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLEVPPSPI 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 926815 932196 + BLOR04030 Blo12g00011 67272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00011 521 Pfam Initiation factor eIF2 gamma, C terminal 422 508 IPR015256 -
Blo12g00011 521 CDD eIF2_gamma 43 247 IPR044128 GO:0005525
Blo12g00011 521 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Blo12g00011 521 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Blo12g00011 521 PRINTS GTP-binding elongation factor signature 41 54 IPR000795 GO:0003924|GO:0005525
Blo12g00011 521 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Blo12g00011 521 Pfam Elongation factor Tu GTP binding domain 43 243 IPR000795 GO:0003924|GO:0005525
Blo12g00011 521 CDD eIF2_gamma_III 422 508 IPR015256 -
Blo12g00011 521 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 37 246 IPR000795 GO:0003924|GO:0005525
Blo12g00011 521 Gene3D - 43 247 IPR027417 -
Blo12g00011 521 CDD eIF2_gamma_II 248 361 IPR044127 GO:0000049
Blo12g00011 521 PANTHER BNAC05G02310D PROTEIN 415 520 - -
Blo12g00011 521 PANTHER BNAC05G02310D PROTEIN 42 380 - -
Blo12g00011 521 SUPERFAMILY Translation proteins 247 361 IPR009000 -
Blo12g00011 521 Gene3D Translation factors 249 363 - -
Blo12g00011 521 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 42 380 - -
Blo12g00011 521 Pfam Elongation factor Tu domain 2 275 357 IPR004161 GO:0005525
Blo12g00011 521 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 419 509 IPR009001 -
Blo12g00011 521 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 415 520 - -
Blo12g00011 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 243 IPR027417 -
Blo12g00011 521 Gene3D Translation factors 414 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00071 Blo-Chr1:901271 Blo12g00011 Blo-Chr12:926815 0 dispersed
Blo12g00011 Blo-Chr12:926815 Blo05g00350 Blo-Chr5:4099564 6.29E-14 dispersed
Blo12g00011 Blo-Chr12:926815 Blo16g00232 Blo-Chr16:5205311 1.72E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00011 K03242 - mnt:21409782 778.474